Results 1 - 20 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8995 | 3' | -53.8 | NC_002512.2 | + | 100994 | 0.69 | 0.944028 |
Target: 5'- gCGGAUCGCC-AGgcccgucUCGUCC-CUcagcagGCGCa -3' miRNA: 3'- -GCCUAGCGGcUCa------AGCAGGuGA------UGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 173546 | 0.71 | 0.889204 |
Target: 5'- gGGGUUGCUGAGUUCcauGUCCAUUGucUGUc -3' miRNA: 3'- gCCUAGCGGCUCAAG---CAGGUGAU--GCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 60882 | 0.71 | 0.889204 |
Target: 5'- cCGGAUCGCCGAGccggcgcgCGaCCGCU-CGg -3' miRNA: 3'- -GCCUAGCGGCUCaa------GCaGGUGAuGCg -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 35862 | 0.71 | 0.907995 |
Target: 5'- uGGAUCGCCGAcucccgGUCCAUcGCGUu -3' miRNA: 3'- gCCUAGCGGCUcaag--CAGGUGaUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 12417 | 0.7 | 0.924789 |
Target: 5'- gGGAUCG-CGAGcUCG-CCGC-GCGCg -3' miRNA: 3'- gCCUAGCgGCUCaAGCaGGUGaUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 8791 | 0.7 | 0.929936 |
Target: 5'- aGGAggCGCCgGAGggCGUCCcCcACGCc -3' miRNA: 3'- gCCUa-GCGG-CUCaaGCAGGuGaUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 8367 | 0.7 | 0.934858 |
Target: 5'- gGGAgCGCCGAGga--UCCGCgGCGCc -3' miRNA: 3'- gCCUaGCGGCUCaagcAGGUGaUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 25178 | 0.69 | 0.939096 |
Target: 5'- cCGGGcccgccgUCGCCGAcGUcgCGUCCGCcGCGa -3' miRNA: 3'- -GCCU-------AGCGGCU-CAa-GCAGGUGaUGCg -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 96946 | 0.69 | 0.944028 |
Target: 5'- gCGGGgcgucgCGCCGAccgUCGUCCGCgucuucCGCc -3' miRNA: 3'- -GCCUa-----GCGGCUca-AGCAGGUGau----GCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 96448 | 0.71 | 0.888544 |
Target: 5'- cCGcGAUCGaucccguccgcguCCGGGUuuuUCGUCCGCgggGCGCc -3' miRNA: 3'- -GC-CUAGC-------------GGCUCA---AGCAGGUGa--UGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 97473 | 0.71 | 0.873492 |
Target: 5'- uGGAUCGCCGcggucgauccccccAucacGUUCGUCCACgacuucCGCg -3' miRNA: 3'- gCCUAGCGGC--------------U----CAAGCAGGUGau----GCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 222568 | 0.72 | 0.861183 |
Target: 5'- gCGGucAUCGUCGuAGUUCGUCUACUAgauauCGUg -3' miRNA: 3'- -GCC--UAGCGGC-UCAAGCAGGUGAU-----GCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 100345 | 0.75 | 0.722321 |
Target: 5'- gCGGG-CGCCGGccacgcagcacGgcgUCGUCCugUACGCg -3' miRNA: 3'- -GCCUaGCGGCU-----------Ca--AGCAGGugAUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 135237 | 0.74 | 0.750806 |
Target: 5'- cCGGGcCGCCucGAGgccgUCGUCCGCgccGCGCu -3' miRNA: 3'- -GCCUaGCGG--CUCa---AGCAGGUGa--UGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 13380 | 0.74 | 0.769317 |
Target: 5'- uGG--UGCCGcGGUUCGUCCGCUaccugACGCg -3' miRNA: 3'- gCCuaGCGGC-UCAAGCAGGUGA-----UGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 136189 | 0.74 | 0.777501 |
Target: 5'- gGGGUCGCCGGGaucgCGUCgACgccggcggccuggUGCGCg -3' miRNA: 3'- gCCUAGCGGCUCaa--GCAGgUG-------------AUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 4853 | 0.73 | 0.787367 |
Target: 5'- gCGGccAUCGCgGGGUUCG-CCGCgugcgGCGCc -3' miRNA: 3'- -GCC--UAGCGgCUCAAGCaGGUGa----UGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 121539 | 0.73 | 0.787367 |
Target: 5'- cCGGcgCGCCGGGgUCGagCACgagACGCu -3' miRNA: 3'- -GCCuaGCGGCUCaAGCagGUGa--UGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 24481 | 0.73 | 0.821821 |
Target: 5'- aGGAggCGCCgGAGU---UCCGCUGCGCc -3' miRNA: 3'- gCCUa-GCGG-CUCAagcAGGUGAUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 95183 | 0.73 | 0.830047 |
Target: 5'- gCGGAgagCGCCcgcgaGAGgaCGUCCGCggucGCGCg -3' miRNA: 3'- -GCCUa--GCGG-----CUCaaGCAGGUGa---UGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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