miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8995 3' -53.8 NC_002512.2 + 4328 0.68 0.969298
Target:  5'- uCGGccucGUCGCCGAagaagUCGUCCuCcGCGCc -3'
miRNA:   3'- -GCC----UAGCGGCUca---AGCAGGuGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 4853 0.73 0.787367
Target:  5'- gCGGccAUCGCgGGGUUCG-CCGCgugcgGCGCc -3'
miRNA:   3'- -GCC--UAGCGgCUCAAGCaGGUGa----UGCG- -5'
8995 3' -53.8 NC_002512.2 + 8194 0.66 0.988238
Target:  5'- aGGccgagcGUCGCCGGGcgggUGUCCGCgucccagACGUa -3'
miRNA:   3'- gCC------UAGCGGCUCaa--GCAGGUGa------UGCG- -5'
8995 3' -53.8 NC_002512.2 + 8367 0.7 0.934858
Target:  5'- gGGAgCGCCGAGga--UCCGCgGCGCc -3'
miRNA:   3'- gCCUaGCGGCUCaagcAGGUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 8791 0.7 0.929936
Target:  5'- aGGAggCGCCgGAGggCGUCCcCcACGCc -3'
miRNA:   3'- gCCUa-GCGG-CUCaaGCAGGuGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 10545 0.68 0.974699
Target:  5'- gCGGA-CGCCGGGcagccggCGggCCACgccgACGCu -3'
miRNA:   3'- -GCCUaGCGGCUCaa-----GCa-GGUGa---UGCG- -5'
8995 3' -53.8 NC_002512.2 + 12417 0.7 0.924789
Target:  5'- gGGAUCG-CGAGcUCG-CCGC-GCGCg -3'
miRNA:   3'- gCCUAGCgGCUCaAGCaGGUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 13279 0.66 0.991918
Target:  5'- aGGAUUGCgugGAGgaUGUCCACgcgACGa -3'
miRNA:   3'- gCCUAGCGg--CUCaaGCAGGUGa--UGCg -5'
8995 3' -53.8 NC_002512.2 + 13380 0.74 0.769317
Target:  5'- uGG--UGCCGcGGUUCGUCCGCUaccugACGCg -3'
miRNA:   3'- gCCuaGCGGC-UCAAGCAGGUGA-----UGCG- -5'
8995 3' -53.8 NC_002512.2 + 15223 0.69 0.948279
Target:  5'- gCGGGUCGCCGAGg-CG-CCgggaggagagACUGCGa -3'
miRNA:   3'- -GCCUAGCGGCUCaaGCaGG----------UGAUGCg -5'
8995 3' -53.8 NC_002512.2 + 16588 0.68 0.963121
Target:  5'- aGGAaaUCGaCGAGgUCGUCgGCcACGCg -3'
miRNA:   3'- gCCU--AGCgGCUCaAGCAGgUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 20683 0.67 0.981455
Target:  5'- aCGGGccgcaggCGCCGcucGGUcuccUCGUCCACgaggaucuUGCGCg -3'
miRNA:   3'- -GCCUa------GCGGC---UCA----AGCAGGUG--------AUGCG- -5'
8995 3' -53.8 NC_002512.2 + 22067 0.66 0.991267
Target:  5'- gGGAgaCGCCGAGUcgggguucggagagcUCGUCCggccgggagACgACGCc -3'
miRNA:   3'- gCCUa-GCGGCUCA---------------AGCAGG---------UGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 24481 0.73 0.821821
Target:  5'- aGGAggCGCCgGAGU---UCCGCUGCGCc -3'
miRNA:   3'- gCCUa-GCGG-CUCAagcAGGUGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 24811 0.68 0.974447
Target:  5'- aCGGAUCGCCGccgcucuccagccAGUagGUCCGggccCGCg -3'
miRNA:   3'- -GCCUAGCGGC-------------UCAagCAGGUgau-GCG- -5'
8995 3' -53.8 NC_002512.2 + 25178 0.69 0.939096
Target:  5'- cCGGGcccgccgUCGCCGAcGUcgCGUCCGCcGCGa -3'
miRNA:   3'- -GCCU-------AGCGGCU-CAa-GCAGGUGaUGCg -5'
8995 3' -53.8 NC_002512.2 + 31701 0.67 0.977124
Target:  5'- gCGGAccuguUCGCCGAcGUggagGUCCGCcggccgGCGCc -3'
miRNA:   3'- -GCCU-----AGCGGCU-CAag--CAGGUGa-----UGCG- -5'
8995 3' -53.8 NC_002512.2 + 32083 0.66 0.989586
Target:  5'- gGGGUCGCCGAuggcggcccGggUGUCCu---CGCg -3'
miRNA:   3'- gCCUAGCGGCU---------CaaGCAGGugauGCG- -5'
8995 3' -53.8 NC_002512.2 + 35810 0.67 0.977124
Target:  5'- aGGAUCGCgGAca--GUCUGCUGCaGCu -3'
miRNA:   3'- gCCUAGCGgCUcaagCAGGUGAUG-CG- -5'
8995 3' -53.8 NC_002512.2 + 35862 0.71 0.907995
Target:  5'- uGGAUCGCCGAcucccgGUCCAUcGCGUu -3'
miRNA:   3'- gCCUAGCGGCUcaag--CAGGUGaUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.