miRNA display CGI


Results 1 - 20 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8996 3' -57 NC_002512.2 + 153262 0.66 0.958079
Target:  5'- aUGCGAUGCgGcgGGUCcugGUCGGCuGGCu -3'
miRNA:   3'- gGCGCUGCGgCa-CCAG---UAGCCG-UUGc -5'
8996 3' -57 NC_002512.2 + 43669 0.66 0.958079
Target:  5'- uCgGUGGCgGCCGcgGcGUCAUCGGCGc-- -3'
miRNA:   3'- -GgCGCUG-CGGCa-C-CAGUAGCCGUugc -5'
8996 3' -57 NC_002512.2 + 219448 0.66 0.958079
Target:  5'- uCCGCGcCcCCGUGccCGaCGGCGACGa -3'
miRNA:   3'- -GGCGCuGcGGCACcaGUaGCCGUUGC- -5'
8996 3' -57 NC_002512.2 + 12373 0.66 0.958079
Target:  5'- aCCGCGAccccccgagcuCGCCuucgGG-CggCGGCGGCGg -3'
miRNA:   3'- -GGCGCU-----------GCGGca--CCaGuaGCCGUUGC- -5'
8996 3' -57 NC_002512.2 + 7448 0.66 0.958079
Target:  5'- gCCGCGGC-CCGgGGgaagCcgCGGCG-CGg -3'
miRNA:   3'- -GGCGCUGcGGCaCCa---GuaGCCGUuGC- -5'
8996 3' -57 NC_002512.2 + 115108 0.66 0.958079
Target:  5'- gUCGgGACGCCGUGcccCGUC-GCGACc -3'
miRNA:   3'- -GGCgCUGCGGCACca-GUAGcCGUUGc -5'
8996 3' -57 NC_002512.2 + 75576 0.66 0.958079
Target:  5'- gCCGC--CGCCGUcgcGGUCGacgUGGCGGCu -3'
miRNA:   3'- -GGCGcuGCGGCA---CCAGUa--GCCGUUGc -5'
8996 3' -57 NC_002512.2 + 39826 0.66 0.958079
Target:  5'- gCCGCGGCcaGCuCGUGGaugaacaugaccUCGUCGG-AGCa -3'
miRNA:   3'- -GGCGCUG--CG-GCACC------------AGUAGCCgUUGc -5'
8996 3' -57 NC_002512.2 + 217623 0.66 0.958079
Target:  5'- -gGCGGCGCCacgGGUC-UCGuGCugauGCGg -3'
miRNA:   3'- ggCGCUGCGGca-CCAGuAGC-CGu---UGC- -5'
8996 3' -57 NC_002512.2 + 202151 0.66 0.958079
Target:  5'- gCCGCGGgGCgGgUGGUCGUucccgUGGUcguGACGg -3'
miRNA:   3'- -GGCGCUgCGgC-ACCAGUA-----GCCG---UUGC- -5'
8996 3' -57 NC_002512.2 + 207600 0.66 0.958079
Target:  5'- cCUGCGACGgCGgcGG-CugcugCGGCGGCGa -3'
miRNA:   3'- -GGCGCUGCgGCa-CCaGua---GCCGUUGC- -5'
8996 3' -57 NC_002512.2 + 107716 0.66 0.958079
Target:  5'- gUCGUGGCGCaggucgcagagGUGGgugCggUGGCAGCGg -3'
miRNA:   3'- -GGCGCUGCGg----------CACCa--GuaGCCGUUGC- -5'
8996 3' -57 NC_002512.2 + 165571 0.66 0.958079
Target:  5'- uCgGCGACGUgGUGGcCG--GGCAGCc -3'
miRNA:   3'- -GgCGCUGCGgCACCaGUagCCGUUGc -5'
8996 3' -57 NC_002512.2 + 98127 0.66 0.958079
Target:  5'- gCCGgGGCGC--UGGUCGUC-GCGGCc -3'
miRNA:   3'- -GGCgCUGCGgcACCAGUAGcCGUUGc -5'
8996 3' -57 NC_002512.2 + 133594 0.66 0.958079
Target:  5'- cCCGCGGCGgC--GGcCcgCGGCAGCc -3'
miRNA:   3'- -GGCGCUGCgGcaCCaGuaGCCGUUGc -5'
8996 3' -57 NC_002512.2 + 97350 0.66 0.957373
Target:  5'- gCCGaCGGCGCCGcccgcggagcggGGaCcgCGGCGGCc -3'
miRNA:   3'- -GGC-GCUGCGGCa-----------CCaGuaGCCGUUGc -5'
8996 3' -57 NC_002512.2 + 153741 0.66 0.954468
Target:  5'- uCCGUGGgGggGUGGUCGaaUCGGaCGACGu -3'
miRNA:   3'- -GGCGCUgCggCACCAGU--AGCC-GUUGC- -5'
8996 3' -57 NC_002512.2 + 79479 0.66 0.954468
Target:  5'- aCCGCG-CGcCCGUGGgcgguUCGGgGAgGg -3'
miRNA:   3'- -GGCGCuGC-GGCACCagu--AGCCgUUgC- -5'
8996 3' -57 NC_002512.2 + 8545 0.66 0.954468
Target:  5'- gCgGCGAgGCCGcGGUC-UCGGauccACGg -3'
miRNA:   3'- -GgCGCUgCGGCaCCAGuAGCCgu--UGC- -5'
8996 3' -57 NC_002512.2 + 62715 0.66 0.954468
Target:  5'- aCGCGcagcGCGUCGcGGUCGaCGGCcucGCGg -3'
miRNA:   3'- gGCGC----UGCGGCaCCAGUaGCCGu--UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.