miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8997 3' -61.3 NC_002512.2 + 215468 0.69 0.584563
Target:  5'- aUCG-CCGGCGucgacuccuCCUGG-CGCCUGCu- -3'
miRNA:   3'- cAGCaGGCCGU---------GGACCuGCGGACGca -5'
8997 3' -61.3 NC_002512.2 + 72791 0.69 0.59413
Target:  5'- cGUCG-CCGGgacgggccCGCCgUGGGCGCCgGCGa -3'
miRNA:   3'- -CAGCaGGCC--------GUGG-ACCUGCGGaCGCa -5'
8997 3' -61.3 NC_002512.2 + 95995 0.69 0.59413
Target:  5'- -gCGUCCGGCGCC-GcGAcCGCCagGCGg -3'
miRNA:   3'- caGCAGGCCGUGGaC-CU-GCGGa-CGCa -5'
8997 3' -61.3 NC_002512.2 + 100323 0.69 0.603723
Target:  5'- -aCGUcCCGGCGCCUcgggacuggcGGGCGCCgGCc- -3'
miRNA:   3'- caGCA-GGCCGUGGA----------CCUGCGGaCGca -5'
8997 3' -61.3 NC_002512.2 + 114015 0.69 0.620069
Target:  5'- cGUCGUCCGGCgggcccGCCUcGGcgaACGCCUcgaggcaggggcccGCGUc -3'
miRNA:   3'- -CAGCAGGCCG------UGGA-CC---UGCGGA--------------CGCA- -5'
8997 3' -61.3 NC_002512.2 + 13391 0.69 0.622957
Target:  5'- uUCGUCCGcUACCU-GACGCgCUGCGc -3'
miRNA:   3'- cAGCAGGCcGUGGAcCUGCG-GACGCa -5'
8997 3' -61.3 NC_002512.2 + 211443 0.69 0.632587
Target:  5'- -cUGcCCGGaGCUcGGGCGCCUGCGg -3'
miRNA:   3'- caGCaGGCCgUGGaCCUGCGGACGCa -5'
8997 3' -61.3 NC_002512.2 + 156810 0.68 0.651838
Target:  5'- cGUCGUgcacucggUCGGCaACCUGugcGAgGCCUGCGg -3'
miRNA:   3'- -CAGCA--------GGCCG-UGGAC---CUgCGGACGCa -5'
8997 3' -61.3 NC_002512.2 + 107805 0.68 0.651838
Target:  5'- -gCGUCCGGCGCgUGcGGCagccacuucaGCCUGCu- -3'
miRNA:   3'- caGCAGGCCGUGgAC-CUG----------CGGACGca -5'
8997 3' -61.3 NC_002512.2 + 113903 0.68 0.655684
Target:  5'- aUCGUCCGggggaccucgcgccGCACCUGGuagaagugcaccagGCGCCUagucGCGUu -3'
miRNA:   3'- cAGCAGGC--------------CGUGGACC--------------UGCGGA----CGCA- -5'
8997 3' -61.3 NC_002512.2 + 145966 0.68 0.661447
Target:  5'- -gCGcCgGGCGCugCUGGACGCCUGgGc -3'
miRNA:   3'- caGCaGgCCGUG--GACCUGCGGACgCa -5'
8997 3' -61.3 NC_002512.2 + 149878 0.68 0.670077
Target:  5'- cUCGUCCGGCuccggcugccgcuGCCUGGACcUCcGCGc -3'
miRNA:   3'- cAGCAGGCCG-------------UGGACCUGcGGaCGCa -5'
8997 3' -61.3 NC_002512.2 + 91475 0.68 0.671034
Target:  5'- --gGUCaGGUACUUGGugGCCcGCGg -3'
miRNA:   3'- cagCAGgCCGUGGACCugCGGaCGCa -5'
8997 3' -61.3 NC_002512.2 + 119535 0.68 0.671034
Target:  5'- gGUCGUCCGaGCugUUGGccCGCUUGgCGg -3'
miRNA:   3'- -CAGCAGGC-CGugGACCu-GCGGAC-GCa -5'
8997 3' -61.3 NC_002512.2 + 96799 0.68 0.671034
Target:  5'- aGUCG-CUGGCGCCaaccGGAcccacCGCCUGCa- -3'
miRNA:   3'- -CAGCaGGCCGUGGa---CCU-----GCGGACGca -5'
8997 3' -61.3 NC_002512.2 + 223176 0.68 0.674862
Target:  5'- uUCGUCUGGUACgUGGACggGCCgcccgacggggacgGCGUc -3'
miRNA:   3'- cAGCAGGCCGUGgACCUG--CGGa-------------CGCA- -5'
8997 3' -61.3 NC_002512.2 + 67767 0.68 0.680594
Target:  5'- gGUCGucUCCGGCGCCgGGGuCGUCgGUGa -3'
miRNA:   3'- -CAGC--AGGCCGUGGaCCU-GCGGaCGCa -5'
8997 3' -61.3 NC_002512.2 + 78611 0.68 0.686313
Target:  5'- uUCGUCCGGCGCCaucuUGGAUgacucacgGCCgaccgagaugaugGCGUc -3'
miRNA:   3'- cAGCAGGCCGUGG----ACCUG--------CGGa------------CGCA- -5'
8997 3' -61.3 NC_002512.2 + 165141 0.68 0.690118
Target:  5'- -cUGUUCGGCGCUaccgcguuggGGACGCCcguuUGCGUg -3'
miRNA:   3'- caGCAGGCCGUGGa---------CCUGCGG----ACGCA- -5'
8997 3' -61.3 NC_002512.2 + 102364 0.68 0.690118
Target:  5'- gGUCGUCCGGagguCCUGGA-GCCgGaCGa -3'
miRNA:   3'- -CAGCAGGCCgu--GGACCUgCGGaC-GCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.