miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8997 3' -61.3 NC_002512.2 + 223268 0.67 0.727713
Target:  5'- cGUCGUCgGGgGgCgGGACGCC-GCGc -3'
miRNA:   3'- -CAGCAGgCCgUgGaCCUGCGGaCGCa -5'
8997 3' -61.3 NC_002512.2 + 223176 0.68 0.674862
Target:  5'- uUCGUCUGGUACgUGGACggGCCgcccgacggggacgGCGUc -3'
miRNA:   3'- cAGCAGGCCGUGgACCUG--CGGa-------------CGCA- -5'
8997 3' -61.3 NC_002512.2 + 221825 0.66 0.790395
Target:  5'- cUCGUCuCGGCGuCCgacccgcggGGGCGCCU-CGg -3'
miRNA:   3'- cAGCAG-GCCGU-GGa--------CCUGCGGAcGCa -5'
8997 3' -61.3 NC_002512.2 + 221779 0.7 0.537288
Target:  5'- cGUCGUgucCUGGCGCCUGcucuACGCCgGCGa -3'
miRNA:   3'- -CAGCA---GGCCGUGGACc---UGCGGaCGCa -5'
8997 3' -61.3 NC_002512.2 + 220643 0.66 0.798905
Target:  5'- cGUCGUCCuguGGCgcgagcgccACCUGGccCGCC-GCGUc -3'
miRNA:   3'- -CAGCAGG---CCG---------UGGACCu-GCGGaCGCA- -5'
8997 3' -61.3 NC_002512.2 + 220518 0.69 0.575025
Target:  5'- cGUCGcCCGGgACCUGGAgGagcugCUGCGc -3'
miRNA:   3'- -CAGCaGGCCgUGGACCUgCg----GACGCa -5'
8997 3' -61.3 NC_002512.2 + 219267 0.67 0.736948
Target:  5'- cUCGUCCGGCAgggggcGGACGCCgacGcCGUg -3'
miRNA:   3'- cAGCAGGCCGUgga---CCUGCGGa--C-GCA- -5'
8997 3' -61.3 NC_002512.2 + 217678 0.66 0.781759
Target:  5'- --gGUCCGGgCGCUUGGGCuggcucuuccccGCCgGCGUc -3'
miRNA:   3'- cagCAGGCC-GUGGACCUG------------CGGaCGCA- -5'
8997 3' -61.3 NC_002512.2 + 216223 0.7 0.54665
Target:  5'- cUCGUCCGGgAgCUGGA-GCCgcgGCGa -3'
miRNA:   3'- cAGCAGGCCgUgGACCUgCGGa--CGCa -5'
8997 3' -61.3 NC_002512.2 + 215468 0.69 0.584563
Target:  5'- aUCG-CCGGCGucgacuccuCCUGG-CGCCUGCu- -3'
miRNA:   3'- cAGCaGGCCGU---------GGACCuGCGGACGca -5'
8997 3' -61.3 NC_002512.2 + 214571 0.66 0.763246
Target:  5'- cGUCGUCCccuccCGCCUGGGCGacgagacgcucuuCCUGCa- -3'
miRNA:   3'- -CAGCAGGcc---GUGGACCUGC-------------GGACGca -5'
8997 3' -61.3 NC_002512.2 + 213970 0.74 0.359006
Target:  5'- -cCGUCgGGCACCUGGAUaUCUGUGg -3'
miRNA:   3'- caGCAGgCCGUGGACCUGcGGACGCa -5'
8997 3' -61.3 NC_002512.2 + 211443 0.69 0.632587
Target:  5'- -cUGcCCGGaGCUcGGGCGCCUGCGg -3'
miRNA:   3'- caGCaGGCCgUGGaCCUGCGGACGCa -5'
8997 3' -61.3 NC_002512.2 + 211134 0.67 0.718405
Target:  5'- cGUCGaggCCGaGgACCUGGGCGUCauccaggGCGUg -3'
miRNA:   3'- -CAGCa--GGC-CgUGGACCUGCGGa------CGCA- -5'
8997 3' -61.3 NC_002512.2 + 210966 0.78 0.183541
Target:  5'- gGUCGUCCgGGC-CCUGuGucGCGCCUGCGUg -3'
miRNA:   3'- -CAGCAGG-CCGuGGAC-C--UGCGGACGCA- -5'
8997 3' -61.3 NC_002512.2 + 201847 0.7 0.537288
Target:  5'- -gCGgCCGGCagcucGCCUGGG-GCCUGCGg -3'
miRNA:   3'- caGCaGGCCG-----UGGACCUgCGGACGCa -5'
8997 3' -61.3 NC_002512.2 + 197316 0.66 0.755168
Target:  5'- -aCGaccCCGGCACCcGcGGCGCCcgGCGg -3'
miRNA:   3'- caGCa--GGCCGUGGaC-CUGCGGa-CGCa -5'
8997 3' -61.3 NC_002512.2 + 195294 0.67 0.727713
Target:  5'- -gCGggggCCGGCGCCgaaGGGCGCgaGCu- -3'
miRNA:   3'- caGCa---GGCCGUGGa--CCUGCGgaCGca -5'
8997 3' -61.3 NC_002512.2 + 193953 0.71 0.473557
Target:  5'- cGUCGUCUGGCGCgaGaGGcCGCCgGCGa -3'
miRNA:   3'- -CAGCAGGCCGUGgaC-CU-GCGGaCGCa -5'
8997 3' -61.3 NC_002512.2 + 193219 0.67 0.71747
Target:  5'- cGUUGcCCGGCAgCCUGGGggucaacUGCCgacgGCGg -3'
miRNA:   3'- -CAGCaGGCCGU-GGACCU-------GCGGa---CGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.