Results 1 - 20 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8997 | 3' | -61.3 | NC_002512.2 | + | 78611 | 0.68 | 0.686313 |
Target: 5'- uUCGUCCGGCGCCaucuUGGAUgacucacgGCCgaccgagaugaugGCGUc -3' miRNA: 3'- cAGCAGGCCGUGG----ACCUG--------CGGa------------CGCA- -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 114015 | 0.69 | 0.620069 |
Target: 5'- cGUCGUCCGGCgggcccGCCUcGGcgaACGCCUcgaggcaggggcccGCGUc -3' miRNA: 3'- -CAGCAGGCCG------UGGA-CC---UGCGGA--------------CGCA- -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 13391 | 0.69 | 0.622957 |
Target: 5'- uUCGUCCGcUACCU-GACGCgCUGCGc -3' miRNA: 3'- cAGCAGGCcGUGGAcCUGCG-GACGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 107805 | 0.68 | 0.651838 |
Target: 5'- -gCGUCCGGCGCgUGcGGCagccacuucaGCCUGCu- -3' miRNA: 3'- caGCAGGCCGUGgAC-CUG----------CGGACGca -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 113903 | 0.68 | 0.655684 |
Target: 5'- aUCGUCCGggggaccucgcgccGCACCUGGuagaagugcaccagGCGCCUagucGCGUu -3' miRNA: 3'- cAGCAGGC--------------CGUGGACC--------------UGCGGA----CGCA- -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 91475 | 0.68 | 0.671034 |
Target: 5'- --gGUCaGGUACUUGGugGCCcGCGg -3' miRNA: 3'- cagCAGgCCGUGGACCugCGGaCGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 119535 | 0.68 | 0.671034 |
Target: 5'- gGUCGUCCGaGCugUUGGccCGCUUGgCGg -3' miRNA: 3'- -CAGCAGGC-CGugGACCu-GCGGAC-GCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 96799 | 0.68 | 0.671034 |
Target: 5'- aGUCG-CUGGCGCCaaccGGAcccacCGCCUGCa- -3' miRNA: 3'- -CAGCaGGCCGUGGa---CCU-----GCGGACGca -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 67767 | 0.68 | 0.680594 |
Target: 5'- gGUCGucUCCGGCGCCgGGGuCGUCgGUGa -3' miRNA: 3'- -CAGC--AGGCCGUGGaCCU-GCGGaCGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 100323 | 0.69 | 0.603723 |
Target: 5'- -aCGUcCCGGCGCCUcgggacuggcGGGCGCCgGCc- -3' miRNA: 3'- caGCA-GGCCGUGGA----------CCUGCGGaCGca -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 95995 | 0.69 | 0.59413 |
Target: 5'- -gCGUCCGGCGCC-GcGAcCGCCagGCGg -3' miRNA: 3'- caGCAGGCCGUGGaC-CU-GCGGa-CGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 72791 | 0.69 | 0.59413 |
Target: 5'- cGUCG-CCGGgacgggccCGCCgUGGGCGCCgGCGa -3' miRNA: 3'- -CAGCaGGCC--------GUGG-ACCUGCGGaCGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 49836 | 0.75 | 0.302812 |
Target: 5'- gGUCGUCCGGCACCcGcacCGCCUGgGa -3' miRNA: 3'- -CAGCAGGCCGUGGaCcu-GCGGACgCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 124278 | 0.72 | 0.447416 |
Target: 5'- -aCGgCCGGUGCCUcGGCGCCUGCa- -3' miRNA: 3'- caGCaGGCCGUGGAcCUGCGGACGca -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 101615 | 0.71 | 0.500443 |
Target: 5'- cGUCGgcCCGGCGCCgGGACGCgaGUc- -3' miRNA: 3'- -CAGCa-GGCCGUGGaCCUGCGgaCGca -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 131081 | 0.7 | 0.537288 |
Target: 5'- cGUCGcUCCGGCcgccgggguACCUGGACGUggUGCGc -3' miRNA: 3'- -CAGC-AGGCCG---------UGGACCUGCGg-ACGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 23752 | 0.7 | 0.54665 |
Target: 5'- -cCGUCUGGCgACC-GGACGCCccgcUGCGc -3' miRNA: 3'- caGCAGGCCG-UGGaCCUGCGG----ACGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 55231 | 0.7 | 0.54665 |
Target: 5'- aUCGUgCGGCACCUGGAgaacgUGCCgGaCGa -3' miRNA: 3'- cAGCAgGCCGUGGACCU-----GCGGaC-GCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 84788 | 0.7 | 0.565524 |
Target: 5'- uGUCGgCCGGCAgCcGcGACGCCUcGCGg -3' miRNA: 3'- -CAGCaGGCCGUgGaC-CUGCGGA-CGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 154442 | 0.69 | 0.575025 |
Target: 5'- cUUGUCCGGCGCCgucgacGGugcguuccccuCGCCUGUGg -3' miRNA: 3'- cAGCAGGCCGUGGa-----CCu----------GCGGACGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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