Results 21 - 40 of 439 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8998 | 3' | -59.2 | NC_002512.2 | + | 67728 | 0.76 | 0.388959 |
Target: 5'- gGCCGcuuUCgCGGUCGGCGuGCCGgCCu -3' miRNA: 3'- gCGGCuuuAG-GCCAGCCGC-CGGCaGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 81367 | 0.76 | 0.388959 |
Target: 5'- gGCCGggG-CgGG-CGGCGGCCG-CCu -3' miRNA: 3'- gCGGCuuUaGgCCaGCCGCCGGCaGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 90655 | 0.76 | 0.388959 |
Target: 5'- gGCCGcgGUCuCGGagUCGGCGGCCGcggcggCCa -3' miRNA: 3'- gCGGCuuUAG-GCC--AGCCGCCGGCa-----GG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 98165 | 0.76 | 0.388959 |
Target: 5'- uCGCCGcgGUCUGGacgggcgCGGCGaCCGUCCg -3' miRNA: 3'- -GCGGCuuUAGGCCa------GCCGCcGGCAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 128798 | 0.76 | 0.404827 |
Target: 5'- gGCCGggGUCUucagcgagaGGUCGGCGGCgGcgCUg -3' miRNA: 3'- gCGGCuuUAGG---------CCAGCCGCCGgCa-GG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 158867 | 0.75 | 0.421097 |
Target: 5'- uCGUCGAccggCCGG-CGGCGGCCccccGUCCu -3' miRNA: 3'- -GCGGCUuua-GGCCaGCCGCCGG----CAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 211777 | 0.75 | 0.421097 |
Target: 5'- aCGUgGAGGcCCGGguggccgCGGgGGCCGUCCc -3' miRNA: 3'- -GCGgCUUUaGGCCa------GCCgCCGGCAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 52410 | 0.75 | 0.421097 |
Target: 5'- gGCCGAGAagCGGUCGGCGGaCCu--- -3' miRNA: 3'- gCGGCUUUagGCCAGCCGCC-GGcagg -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 71248 | 0.75 | 0.429379 |
Target: 5'- aCGUCGggGUCgaaggGGUCGGa-GCCGUCCa -3' miRNA: 3'- -GCGGCuuUAGg----CCAGCCgcCGGCAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 212832 | 0.75 | 0.429379 |
Target: 5'- cCGCCGggGUUgGGcgCGG-GcGCCGUCCg -3' miRNA: 3'- -GCGGCuuUAGgCCa-GCCgC-CGGCAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 6675 | 0.75 | 0.436913 |
Target: 5'- gGCCGGGAcgcgcUCCGGgacgccguccccgUCgGGCGGCCcGUCCa -3' miRNA: 3'- gCGGCUUU-----AGGCC-------------AG-CCGCCGG-CAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 199291 | 0.75 | 0.437755 |
Target: 5'- gCGCCc---UCCGGUUGGUGGCC-UCCu -3' miRNA: 3'- -GCGGcuuuAGGCCAGCCGCCGGcAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 120761 | 0.75 | 0.446225 |
Target: 5'- aGuCCGAcGUgCUGGacUCGGCGGCCGUCg -3' miRNA: 3'- gC-GGCUuUA-GGCC--AGCCGCCGGCAGg -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 218240 | 0.75 | 0.446225 |
Target: 5'- gCGCCGAuauauGUCCgGGUCGGCGuCC-UCCa -3' miRNA: 3'- -GCGGCUu----UAGG-CCAGCCGCcGGcAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 102216 | 0.74 | 0.454785 |
Target: 5'- uCGCCGcgg-CCGGagCGGCccucgaccGGCCGUCCg -3' miRNA: 3'- -GCGGCuuuaGGCCa-GCCG--------CCGGCAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 154674 | 0.74 | 0.454785 |
Target: 5'- aCGUCGGGcgaccGUCCGcucCGaGCGGCCGUCCg -3' miRNA: 3'- -GCGGCUU-----UAGGCca-GC-CGCCGGCAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 196952 | 0.74 | 0.454785 |
Target: 5'- uGCCGAAuugCUGcUCGaCGGCCGUCCa -3' miRNA: 3'- gCGGCUUua-GGCcAGCcGCCGGCAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 220301 | 0.74 | 0.454785 |
Target: 5'- cCGCCGAGccgCCGGggggcCGGgGGCCGggcUCCg -3' miRNA: 3'- -GCGGCUUua-GGCCa----GCCgCCGGC---AGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 89108 | 0.74 | 0.463433 |
Target: 5'- uCGCgCG---UCUGGUCGGCGGUCGUUUg -3' miRNA: 3'- -GCG-GCuuuAGGCCAGCCGCCGGCAGG- -5' |
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8998 | 3' | -59.2 | NC_002512.2 | + | 92580 | 0.74 | 0.463433 |
Target: 5'- aCGCCGcgg-CCGGgaggGGCGGCgGUCCc -3' miRNA: 3'- -GCGGCuuuaGGCCag--CCGCCGgCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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