Results 21 - 40 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8998 | 5' | -53.6 | NC_002512.2 | + | 200255 | 0.66 | 0.993422 |
Target: 5'- gGGGACga-CGAGGACGACg---ACGg -3' miRNA: 3'- gCUCUGgagGCUCCUGCUGaagaUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 193399 | 0.69 | 0.957995 |
Target: 5'- cCGAGugUUUcuucaucgaCGAGGACGACgacgaCUACGa -3' miRNA: 3'- -GCUCugGAG---------GCUCCUGCUGaa---GAUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 192575 | 0.66 | 0.990263 |
Target: 5'- cCGGGGCCUCgGAgcGGACcgucccGCUgCUGCGg -3' miRNA: 3'- -GCUCUGGAGgCU--CCUGc-----UGAaGAUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 188558 | 0.67 | 0.984333 |
Target: 5'- uCGGGcAgCUCCGgcGGcGACGACUUCU-CGg -3' miRNA: 3'- -GCUC-UgGAGGC--UC-CUGCUGAAGAuGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 184709 | 1.08 | 0.010111 |
Target: 5'- uCGAGACCUCCGAGGACGACUUCUACGc -3' miRNA: 3'- -GCUCUGGAGGCUCCUGCUGAAGAUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 183714 | 0.75 | 0.745601 |
Target: 5'- gGAGACCUCCGAGGAgaucCG-CUUCg--- -3' miRNA: 3'- gCUCUGGAGGCUCCU----GCuGAAGaugc -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 178235 | 0.74 | 0.791413 |
Target: 5'- aGGG-UCUCCGGGGACGGCgcggUCUcCGg -3' miRNA: 3'- gCUCuGGAGGCUCCUGCUGa---AGAuGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 167498 | 0.72 | 0.84182 |
Target: 5'- aCGAGGCCgugUCCGAGGGCGcCa--UGCGg -3' miRNA: 3'- -GCUCUGG---AGGCUCCUGCuGaagAUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 167165 | 0.66 | 0.993422 |
Target: 5'- gCGAGGCCgUCGAccGCGACgcgCUGCGc -3' miRNA: 3'- -GCUCUGGaGGCUccUGCUGaa-GAUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 166442 | 0.69 | 0.950352 |
Target: 5'- cCGu--CCUCCGGGGGCGACg---GCGc -3' miRNA: 3'- -GCucuGGAGGCUCCUGCUGaagaUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 164165 | 0.67 | 0.980285 |
Target: 5'- uCGAGGacaccccgcccuaUCUCCGGGGccucgACGACUUCaUGCa -3' miRNA: 3'- -GCUCU-------------GGAGGCUCC-----UGCUGAAG-AUGc -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 162901 | 0.66 | 0.992477 |
Target: 5'- uGAGcCCUUCGAGGAgGACaccgccaacUUCcGCGu -3' miRNA: 3'- gCUCuGGAGGCUCCUgCUG---------AAGaUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 161841 | 0.67 | 0.97833 |
Target: 5'- aCGAGGCUUCCGGacACGGCgUCgGCGg -3' miRNA: 3'- -GCUCUGGAGGCUccUGCUGaAGaUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 159960 | 0.66 | 0.992477 |
Target: 5'- gGAGACCUaCCGGGaGAccuCGACcugCUACc -3' miRNA: 3'- gCUCUGGA-GGCUC-CU---GCUGaa-GAUGc -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 157262 | 0.71 | 0.898758 |
Target: 5'- --cGACCggCGAGGACGugUUCgugGCGc -3' miRNA: 3'- gcuCUGGagGCUCCUGCugAAGa--UGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 156836 | 0.74 | 0.773439 |
Target: 5'- gCGAGGCCUgCGGGGGCcGCUgCUGCc -3' miRNA: 3'- -GCUCUGGAgGCUCCUGcUGAaGAUGc -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 156448 | 0.72 | 0.84963 |
Target: 5'- gGGGGgCUCCGGGGGCGGCgggggacUCggggGCGg -3' miRNA: 3'- gCUCUgGAGGCUCCUGCUGa------AGa---UGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 155305 | 0.68 | 0.973477 |
Target: 5'- cCGuGACCauggCCGAGGACGAUcUCg--- -3' miRNA: 3'- -GCuCUGGa---GGCUCCUGCUGaAGaugc -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 150318 | 0.66 | 0.993422 |
Target: 5'- gCGAGACCggcggCGAGGACGcCgcg-GCGg -3' miRNA: 3'- -GCUCUGGag---GCUCCUGCuGaagaUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 150039 | 0.68 | 0.970775 |
Target: 5'- aCGAGGgggCCGGGGACGACggg-GCGg -3' miRNA: 3'- -GCUCUggaGGCUCCUGCUGaagaUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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