miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8998 5' -53.6 NC_002512.2 + 36588 0.68 0.973477
Target:  5'- gGAGACCUCC-AGGAgaGCcugCUGCGa -3'
miRNA:   3'- gCUCUGGAGGcUCCUgcUGaa-GAUGC- -5'
8998 5' -53.6 NC_002512.2 + 108592 0.7 0.932419
Target:  5'- gGGGGCC-CCGGGGAgCGGCggCcGCGg -3'
miRNA:   3'- gCUCUGGaGGCUCCU-GCUGaaGaUGC- -5'
8998 5' -53.6 NC_002512.2 + 58012 0.7 0.932419
Target:  5'- gGGGACg-CCGAGGACGGCgUUCcGCc -3'
miRNA:   3'- gCUCUGgaGGCUCCUGCUG-AAGaUGc -5'
8998 5' -53.6 NC_002512.2 + 87834 0.69 0.944482
Target:  5'- aGGGGCCgaggcgaaaugcgCCGAGG-CGAgCUUCUugGu -3'
miRNA:   3'- gCUCUGGa------------GGCUCCuGCU-GAAGAugC- -5'
8998 5' -53.6 NC_002512.2 + 15106 0.69 0.954281
Target:  5'- gGGGACC-CgGAGGGCGACcggcgccggaCUGCGa -3'
miRNA:   3'- gCUCUGGaGgCUCCUGCUGaa--------GAUGC- -5'
8998 5' -53.6 NC_002512.2 + 226902 0.69 0.957995
Target:  5'- aGAGcACCUCgGAGaGACGACg---GCGa -3'
miRNA:   3'- gCUC-UGGAGgCUC-CUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 133841 0.68 0.964791
Target:  5'- gGAGGCCUcuccggaggacaCCGAGGACGucCUgggGCGg -3'
miRNA:   3'- gCUCUGGA------------GGCUCCUGCu-GAagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 121559 0.68 0.970775
Target:  5'- aCGAGACgcUgGAGGACGugUUCU-CGu -3'
miRNA:   3'- -GCUCUGgaGgCUCCUGCugAAGAuGC- -5'
8998 5' -53.6 NC_002512.2 + 22593 0.68 0.971879
Target:  5'- gGAGGCCacggugcuggacacgUCCGGGGagugcaugcGCGAgaUCUGCGa -3'
miRNA:   3'- gCUCUGG---------------AGGCUCC---------UGCUgaAGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 99920 0.71 0.898758
Target:  5'- gGGGGCCcgCCGaAGGGCGGCgucggCUGCu -3'
miRNA:   3'- gCUCUGGa-GGC-UCCUGCUGaa---GAUGc -5'
8998 5' -53.6 NC_002512.2 + 9025 0.71 0.892368
Target:  5'- cCGAGGCC-CCGcGGACGACguagACGc -3'
miRNA:   3'- -GCUCUGGaGGCuCCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 128206 0.72 0.871914
Target:  5'- gCGGGACCggggaCGGGGACGACUgUCUcCa -3'
miRNA:   3'- -GCUCUGGag---GCUCCUGCUGA-AGAuGc -5'
8998 5' -53.6 NC_002512.2 + 128569 0.77 0.608127
Target:  5'- uCGAcGGCCUCCGGGGGcCGACc-CUGCGa -3'
miRNA:   3'- -GCU-CUGGAGGCUCCU-GCUGaaGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 49462 0.77 0.638006
Target:  5'- cCGGGgcGCCgucaCCGAGGACGACUUCgacUACGc -3'
miRNA:   3'- -GCUC--UGGa---GGCUCCUGCUGAAG---AUGC- -5'
8998 5' -53.6 NC_002512.2 + 130664 0.76 0.677746
Target:  5'- gCGGGGCuCUCCGAGGACcggGACgggCUGCu -3'
miRNA:   3'- -GCUCUG-GAGGCUCCUG---CUGaa-GAUGc -5'
8998 5' -53.6 NC_002512.2 + 97127 0.75 0.697435
Target:  5'- gGAGACCUUCGcccgccugcGGGACGACgccgcgCUGCGc -3'
miRNA:   3'- gCUCUGGAGGC---------UCCUGCUGaa----GAUGC- -5'
8998 5' -53.6 NC_002512.2 + 11308 0.75 0.716916
Target:  5'- gGAGACCUCCGAGaGAUGGCcgaCgcgACGg -3'
miRNA:   3'- gCUCUGGAGGCUC-CUGCUGaa-Ga--UGC- -5'
8998 5' -53.6 NC_002512.2 + 11476 0.75 0.745601
Target:  5'- gGAGACCg-CGAGGACGACgacgACGg -3'
miRNA:   3'- gCUCUGGagGCUCCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 129088 0.74 0.754986
Target:  5'- --cGACC-CCGAGGACGgGCggcgUCUGCGg -3'
miRNA:   3'- gcuCUGGaGGCUCCUGC-UGa---AGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 17902 0.73 0.817333
Target:  5'- gCGGcGGCC-CCGAGGACGACggCcGCGu -3'
miRNA:   3'- -GCU-CUGGaGGCUCCUGCUGaaGaUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.