miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8998 5' -53.6 NC_002512.2 + 212392 0.66 0.993511
Target:  5'- uCGAGAUCgaggaggcggccgaCGAGGACGACgg--GCGg -3'
miRNA:   3'- -GCUCUGGag------------GCUCCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 188558 0.67 0.984333
Target:  5'- uCGGGcAgCUCCGgcGGcGACGACUUCU-CGg -3'
miRNA:   3'- -GCUC-UgGAGGC--UC-CUGCUGAAGAuGC- -5'
8998 5' -53.6 NC_002512.2 + 91869 0.67 0.982493
Target:  5'- cCGAGGCCgccgUCCGGcgcGGGCGGCggCgcgGCGc -3'
miRNA:   3'- -GCUCUGG----AGGCU---CCUGCUGaaGa--UGC- -5'
8998 5' -53.6 NC_002512.2 + 184709 1.08 0.010111
Target:  5'- uCGAGACCUCCGAGGACGACUUCUACGc -3'
miRNA:   3'- -GCUCUGGAGGCUCCUGCUGAAGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 150318 0.66 0.993422
Target:  5'- gCGAGACCggcggCGAGGACGcCgcg-GCGg -3'
miRNA:   3'- -GCUCUGGag---GCUCCUGCuGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 100069 0.66 0.993422
Target:  5'- gGGGGCCgcgggCCGGGGACGGa----GCGg -3'
miRNA:   3'- gCUCUGGa----GGCUCCUGCUgaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 159960 0.66 0.992477
Target:  5'- gGAGACCUaCCGGGaGAccuCGACcugCUACc -3'
miRNA:   3'- gCUCUGGA-GGCUC-CU---GCUGaa-GAUGc -5'
8998 5' -53.6 NC_002512.2 + 162901 0.66 0.992477
Target:  5'- uGAGcCCUUCGAGGAgGACaccgccaacUUCcGCGu -3'
miRNA:   3'- gCUCuGGAGGCUCCUgCUG---------AAGaUGC- -5'
8998 5' -53.6 NC_002512.2 + 94388 0.66 0.992477
Target:  5'- gCGuGGCCaugaUCuUGAGGACGGCggUCUugGc -3'
miRNA:   3'- -GCuCUGG----AG-GCUCCUGCUGa-AGAugC- -5'
8998 5' -53.6 NC_002512.2 + 220873 0.67 0.986658
Target:  5'- gCGGGGCCUCgGcGcucuccaucguggccGACGACcUCUACGa -3'
miRNA:   3'- -GCUCUGGAGgCuC---------------CUGCUGaAGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 192575 0.66 0.990263
Target:  5'- cCGGGGCCUCgGAgcGGACcgucccGCUgCUGCGg -3'
miRNA:   3'- -GCUCUGGAGgCU--CCUGc-----UGAaGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 108370 0.66 0.992477
Target:  5'- gGAGcuCC-CCGAGGAUGACgUUCaUGCu -3'
miRNA:   3'- gCUCu-GGaGGCUCCUGCUG-AAG-AUGc -5'
8998 5' -53.6 NC_002512.2 + 134651 0.66 0.993422
Target:  5'- -cGGAcgcccCCUCCgGAGaACGAUUUCUACGa -3'
miRNA:   3'- gcUCU-----GGAGG-CUCcUGCUGAAGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 207747 0.66 0.990141
Target:  5'- gGGGACgCUCCGGGGugGAgccgccgccguggUggUUGCGg -3'
miRNA:   3'- gCUCUG-GAGGCUCCugCU-------------GaaGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 200255 0.66 0.993422
Target:  5'- gGGGACga-CGAGGACGACg---ACGg -3'
miRNA:   3'- gCUCUGgagGCUCCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 143369 0.66 0.992477
Target:  5'- uGGGGCCUCCccgcucaAGGACGGCUauaaaccgUCUccucACGu -3'
miRNA:   3'- gCUCUGGAGGc------UCCUGCUGA--------AGA----UGC- -5'
8998 5' -53.6 NC_002512.2 + 98185 0.66 0.98757
Target:  5'- gCGGcGACCgUCCGAGGgAUGGCgUUCU-CGg -3'
miRNA:   3'- -GCU-CUGG-AGGCUCC-UGCUG-AAGAuGC- -5'
8998 5' -53.6 NC_002512.2 + 226744 0.67 0.982493
Target:  5'- gCGGGACCgggcUCCGGccGGACGACgcggaggGCGa -3'
miRNA:   3'- -GCUCUGG----AGGCU--CCUGCUGaaga---UGC- -5'
8998 5' -53.6 NC_002512.2 + 167165 0.66 0.993422
Target:  5'- gCGAGGCCgUCGAccGCGACgcgCUGCGc -3'
miRNA:   3'- -GCUCUGGaGGCUccUGCUGaa-GAUGC- -5'
8998 5' -53.6 NC_002512.2 + 103893 0.66 0.993332
Target:  5'- aCGAGACCUUCacGGcccugaaGCG-CUUCUGCGu -3'
miRNA:   3'- -GCUCUGGAGGcuCC-------UGCuGAAGAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.