miRNA display CGI


Results 21 - 40 of 520 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8999 5' -70.9 NC_002512.2 + 41243 0.79 0.049729
Target:  5'- cCGCCGCCGCCGCCggCGCCcuuGCGGcccgaGCGCUc -3'
miRNA:   3'- -GCGGCGGCGGCGG--GCGG---CGCC-----CGCGA- -5'
8999 5' -70.9 NC_002512.2 + 119616 0.78 0.057389
Target:  5'- uCGCCGCuCGCCuCCCGCCccaGCGcGGCGCUu -3'
miRNA:   3'- -GCGGCG-GCGGcGGGCGG---CGC-CCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 226820 0.78 0.057389
Target:  5'- gGCCGCCGCCG-CCGCCGCGucCGCc -3'
miRNA:   3'- gCGGCGGCGGCgGGCGGCGCccGCGa -5'
8999 5' -70.9 NC_002512.2 + 96114 0.78 0.054326
Target:  5'- cCGCCGUCGUCGUcgucgucgucgucgUCGUCGCGGGCGCUc -3'
miRNA:   3'- -GCGGCGGCGGCG--------------GGCGGCGCCCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 91864 0.78 0.057389
Target:  5'- uGCCcccgagGCCGCCGUCCGgCGCGGGCGg- -3'
miRNA:   3'- gCGG------CGGCGGCGGGCgGCGCCCGCga -5'
8999 5' -70.9 NC_002512.2 + 187306 0.77 0.071062
Target:  5'- cCGCC-CCGCCGCUCGCCuCGcGGCGCc -3'
miRNA:   3'- -GCGGcGGCGGCGGGCGGcGC-CCGCGa -5'
8999 5' -70.9 NC_002512.2 + 211793 0.77 0.072762
Target:  5'- gGCCGCggggGCCGuCCCGCCGCGG-CGCa -3'
miRNA:   3'- gCGGCGg---CGGC-GGGCGGCGCCcGCGa -5'
8999 5' -70.9 NC_002512.2 + 76521 0.77 0.072762
Target:  5'- cCGCCaGCCGCCGCCCaGCCcaGCGGGaccCGCc -3'
miRNA:   3'- -GCGG-CGGCGGCGGG-CGG--CGCCC---GCGa -5'
8999 5' -70.9 NC_002512.2 + 137342 0.77 0.063119
Target:  5'- aCGUCGUCGCCGCggCCGCCGCGGccggguagauccGCGCg -3'
miRNA:   3'- -GCGGCGGCGGCG--GGCGGCGCC------------CGCGa -5'
8999 5' -70.9 NC_002512.2 + 206905 0.77 0.066188
Target:  5'- gCGCCGCC-CgCGuCCCGCCGCGGGUGa- -3'
miRNA:   3'- -GCGGCGGcG-GC-GGGCGGCGCCCGCga -5'
8999 5' -70.9 NC_002512.2 + 217498 0.77 0.064636
Target:  5'- cCGCCGCCGCCGCCCGaaggcgagcuCgGgGGGuCGCg -3'
miRNA:   3'- -GCGGCGGCGGCGGGC----------GgCgCCC-GCGa -5'
8999 5' -70.9 NC_002512.2 + 96295 0.77 0.063119
Target:  5'- uGCCGCgGgCCG-CCGCCGCGGGCGg- -3'
miRNA:   3'- gCGGCGgC-GGCgGGCGGCGCCCGCga -5'
8999 5' -70.9 NC_002512.2 + 4913 0.77 0.063119
Target:  5'- gCGCCGCCGCCG-CCGCCcaGCGGGUagacgGCg -3'
miRNA:   3'- -GCGGCGGCGGCgGGCGG--CGCCCG-----CGa -5'
8999 5' -70.9 NC_002512.2 + 65431 0.77 0.064636
Target:  5'- gGUCGUCGCC-CCCGCCGaGGGCGCc -3'
miRNA:   3'- gCGGCGGCGGcGGGCGGCgCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 86152 0.77 0.064636
Target:  5'- aCGCCGCgGCCGCCUccgaggcccuGCUGCGGGaGCUg -3'
miRNA:   3'- -GCGGCGgCGGCGGG----------CGGCGCCCgCGA- -5'
8999 5' -70.9 NC_002512.2 + 70898 0.77 0.067775
Target:  5'- gGCCGCCGCCuccgcCCCGCCGUGGcCGCc -3'
miRNA:   3'- gCGGCGGCGGc----GGGCGGCGCCcGCGa -5'
8999 5' -70.9 NC_002512.2 + 150073 0.77 0.063119
Target:  5'- gGaCCGCCGCCG-CCGCCGuCGGGCGa- -3'
miRNA:   3'- gC-GGCGGCGGCgGGCGGC-GCCCGCga -5'
8999 5' -70.9 NC_002512.2 + 11664 0.76 0.07996
Target:  5'- uCGgCGCCGCgGCCCGCCGCGgcccgaGGCGg- -3'
miRNA:   3'- -GCgGCGGCGgCGGGCGGCGC------CCGCga -5'
8999 5' -70.9 NC_002512.2 + 103446 0.76 0.081864
Target:  5'- gGCCGCCGCCG-UCGCCGgcCGGGCGg- -3'
miRNA:   3'- gCGGCGGCGGCgGGCGGC--GCCCGCga -5'
8999 5' -70.9 NC_002512.2 + 88589 0.76 0.081864
Target:  5'- uCGUCGCCGCCGgugCCGCCGUGcGCGCg -3'
miRNA:   3'- -GCGGCGGCGGCg--GGCGGCGCcCGCGa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.