miRNA display CGI


Results 21 - 40 of 520 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8999 5' -70.9 NC_002512.2 + 62963 0.66 0.36379
Target:  5'- uCGUCGCCGCaCGCCuucauggCGUCGCGGaccaGCUu -3'
miRNA:   3'- -GCGGCGGCG-GCGG-------GCGGCGCCcg--CGA- -5'
8999 5' -70.9 NC_002512.2 + 1304 0.66 0.385401
Target:  5'- gCGCCuGCCGCCGacaCGaCCGCGGuaaggaaGCGUc -3'
miRNA:   3'- -GCGG-CGGCGGCgg-GC-GGCGCC-------CGCGa -5'
8999 5' -70.9 NC_002512.2 + 17738 0.66 0.364496
Target:  5'- -cCCGCCGCCaguGCCCGCCGaCGcacaGGUGa- -3'
miRNA:   3'- gcGGCGGCGG---CGGGCGGC-GC----CCGCga -5'
8999 5' -70.9 NC_002512.2 + 80044 0.66 0.401025
Target:  5'- uCGUCGUCGUC-CUCGUcgCGCGGGuCGCUc -3'
miRNA:   3'- -GCGGCGGCGGcGGGCG--GCGCCC-GCGA- -5'
8999 5' -70.9 NC_002512.2 + 131719 0.66 0.393535
Target:  5'- uCGCCGCgcccguccagaCGCgGCgaCCGCCgggGCGGGCGg- -3'
miRNA:   3'- -GCGGCG-----------GCGgCG--GGCGG---CGCCCGCga -5'
8999 5' -70.9 NC_002512.2 + 8130 0.66 0.401025
Target:  5'- gGCCGCCcaGCUGCCguucgacggcgCGuCCGCcaGGCGCUc -3'
miRNA:   3'- gCGGCGG--CGGCGG-----------GC-GGCGc-CCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 99894 0.66 0.378829
Target:  5'- aGgaGgCGCgGCCCGUCGaGGGCGCc -3'
miRNA:   3'- gCggCgGCGgCGGGCGGCgCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 4167 0.66 0.401025
Target:  5'- aGUCGCCGCgGCU---CGCGGGCGaCa -3'
miRNA:   3'- gCGGCGGCGgCGGgcgGCGCCCGC-Ga -5'
8999 5' -70.9 NC_002512.2 + 106091 0.66 0.364496
Target:  5'- gGCCGCUcuucaGCCGCUucgacuCGCC-CGGGCGg- -3'
miRNA:   3'- gCGGCGG-----CGGCGG------GCGGcGCCCGCga -5'
8999 5' -70.9 NC_002512.2 + 5726 0.66 0.393535
Target:  5'- cCGCgCGCCcCCGcCCCGCCucacGCGuccgccucccGGCGCg -3'
miRNA:   3'- -GCG-GCGGcGGC-GGGCGG----CGC----------CCGCGa -5'
8999 5' -70.9 NC_002512.2 + 117513 0.66 0.386136
Target:  5'- gGCCGCCaCCGCCaucguGCCcaagguguccggGCuGGCGCUc -3'
miRNA:   3'- gCGGCGGcGGCGGg----CGG------------CGcCCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 84853 0.66 0.357472
Target:  5'- gGCCGUcccgggCGuuGCgCGCC-CGGGCGUa -3'
miRNA:   3'- gCGGCG------GCggCGgGCGGcGCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 57739 0.66 0.378829
Target:  5'- aCGCaguagacCCGCUGCCCGUCGCGcuccucgucgacGGUGCc -3'
miRNA:   3'- -GCGgc-----GGCGGCGGGCGGCGC------------CCGCGa -5'
8999 5' -70.9 NC_002512.2 + 134653 0.66 0.39279
Target:  5'- aCGCCGUgGCCGagugcggggCCGacgcgauccgucaCCaGCGGGCGCUc -3'
miRNA:   3'- -GCGGCGgCGGCg--------GGC-------------GG-CGCCCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 27373 0.66 0.371615
Target:  5'- cCGCCGCCGCCuccGCcuCCGCCGCcGaacUGCUg -3'
miRNA:   3'- -GCGGCGGCGG---CG--GGCGGCGcCc--GCGA- -5'
8999 5' -70.9 NC_002512.2 + 4805 0.66 0.386136
Target:  5'- gGuuGCUGCgGCagCUGCUGCGGGaCGUg -3'
miRNA:   3'- gCggCGGCGgCG--GGCGGCGCCC-GCGa -5'
8999 5' -70.9 NC_002512.2 + 94686 0.66 0.393535
Target:  5'- gGCgCGCaGCUGCCCucgugcgacaGCuCGCGGuGCGCg -3'
miRNA:   3'- gCG-GCGgCGGCGGG----------CG-GCGCC-CGCGa -5'
8999 5' -70.9 NC_002512.2 + 44317 0.66 0.36027
Target:  5'- uGCUGCCGUuccagguccccucgaCgGCCaCGCCGCGGG-GCc -3'
miRNA:   3'- gCGGCGGCG---------------G-CGG-GCGGCGCCCgCGa -5'
8999 5' -70.9 NC_002512.2 + 80173 0.66 0.357472
Target:  5'- uCGCCGUCGUCGCugCUGCCGCuGcUGCUg -3'
miRNA:   3'- -GCGGCGGCGGCG--GGCGGCGcCcGCGA- -5'
8999 5' -70.9 NC_002512.2 + 229460 0.66 0.386136
Target:  5'- gGCUuuGCgG-CGUCgGUCGCGGGCGCg -3'
miRNA:   3'- gCGG--CGgCgGCGGgCGGCGCCCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.