miRNA display CGI


Results 1 - 20 of 520 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8999 5' -70.9 NC_002512.2 + 126529 0.66 0.370899
Target:  5'- gGCgGCCugaccucgaccguGCCGUCCGCCcCGGGCu-- -3'
miRNA:   3'- gCGgCGG-------------CGGCGGGCGGcGCCCGcga -5'
8999 5' -70.9 NC_002512.2 + 44317 0.66 0.36027
Target:  5'- uGCUGCCGUuccagguccccucgaCgGCCaCGCCGCGGG-GCc -3'
miRNA:   3'- gCGGCGGCG---------------G-CGG-GCGGCGCCCgCGa -5'
8999 5' -70.9 NC_002512.2 + 36981 0.66 0.378829
Target:  5'- gGCgGCU-CUGgaCCGCCGCGGaGCGCg -3'
miRNA:   3'- gCGgCGGcGGCg-GGCGGCGCC-CGCGa -5'
8999 5' -70.9 NC_002512.2 + 17738 0.66 0.364496
Target:  5'- -cCCGCCGCCaguGCCCGCCGaCGcacaGGUGa- -3'
miRNA:   3'- gcGGCGGCGG---CGGGCGGC-GC----CCGCga -5'
8999 5' -70.9 NC_002512.2 + 106091 0.66 0.364496
Target:  5'- gGCCGCUcuucaGCCGCUucgacuCGCC-CGGGCGg- -3'
miRNA:   3'- gCGGCGG-----CGGCGG------GCGGcGCCCGCga -5'
8999 5' -70.9 NC_002512.2 + 20111 0.66 0.378103
Target:  5'- aGCCGCCGg-GCuuGCCgaaagacGCGGaGCGCg -3'
miRNA:   3'- gCGGCGGCggCGggCGG-------CGCC-CGCGa -5'
8999 5' -70.9 NC_002512.2 + 99894 0.66 0.378829
Target:  5'- aGgaGgCGCgGCCCGUCGaGGGCGCc -3'
miRNA:   3'- gCggCgGCGgCGGGCGGCgCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 75625 0.66 0.378829
Target:  5'- gCGCaCGCgGgCaCgCGCaCGCGGGCGCUc -3'
miRNA:   3'- -GCG-GCGgCgGcGgGCG-GCGCCCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 84853 0.66 0.357472
Target:  5'- gGCCGUcccgggCGuuGCgCGCC-CGGGCGUa -3'
miRNA:   3'- gCGGCG------GCggCGgGCGGcGCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 93782 0.66 0.364496
Target:  5'- -cCCGUCGCUGUggCCGCCGCcaGCGCg -3'
miRNA:   3'- gcGGCGGCGGCG--GGCGGCGccCGCGa -5'
8999 5' -70.9 NC_002512.2 + 34593 0.66 0.378829
Target:  5'- gCGCCcuucGgCGCCgGCCC-CCGCGGGgaaCGCg -3'
miRNA:   3'- -GCGG----CgGCGG-CGGGcGGCGCCC---GCGa -5'
8999 5' -70.9 NC_002512.2 + 77154 0.66 0.36947
Target:  5'- gGCCGgaaCGCCucugcguguccccuGCCCGCCGCaccccgaccgGGGaCGCg -3'
miRNA:   3'- gCGGCg--GCGG--------------CGGGCGGCG----------CCC-GCGa -5'
8999 5' -70.9 NC_002512.2 + 62963 0.66 0.36379
Target:  5'- uCGUCGCCGCaCGCCuucauggCGUCGCGGaccaGCUu -3'
miRNA:   3'- -GCGGCGGCG-GCGG-------GCGGCGCCcg--CGA- -5'
8999 5' -70.9 NC_002512.2 + 80173 0.66 0.357472
Target:  5'- uCGCCGUCGUCGCugCUGCCGCuGcUGCUg -3'
miRNA:   3'- -GCGGCGGCGGCG--GGCGGCGcCcGCGA- -5'
8999 5' -70.9 NC_002512.2 + 57739 0.66 0.378829
Target:  5'- aCGCaguagacCCGCUGCCCGUCGCGcuccucgucgacGGUGCc -3'
miRNA:   3'- -GCGgc-----GGCGGCGGGCGGCGC------------CCGCGa -5'
8999 5' -70.9 NC_002512.2 + 119407 0.66 0.364496
Target:  5'- cCGCgUGCCGCUGCUCGggagcguggaCCGCGGggaccugguGCGCg -3'
miRNA:   3'- -GCG-GCGGCGGCGGGC----------GGCGCC---------CGCGa -5'
8999 5' -70.9 NC_002512.2 + 2352 0.66 0.36027
Target:  5'- cCGCCcuccucCCGcCCGUCCGCCGCcggacucucccccccGGGuCGCg -3'
miRNA:   3'- -GCGGc-----GGC-GGCGGGCGGCG---------------CCC-GCGa -5'
8999 5' -70.9 NC_002512.2 + 27373 0.66 0.371615
Target:  5'- cCGCCGCCGCCuccGCcuCCGCCGCcGaacUGCUg -3'
miRNA:   3'- -GCGGCGGCGG---CG--GGCGGCGcCc--GCGA- -5'
8999 5' -70.9 NC_002512.2 + 191669 0.66 0.378829
Target:  5'- gGCCGUCuCCGCUauCGUCGCGGGauuGCc -3'
miRNA:   3'- gCGGCGGcGGCGG--GCGGCGCCCg--CGa -5'
8999 5' -70.9 NC_002512.2 + 99953 0.66 0.364496
Target:  5'- uGCCGCCGgUGCCUGaucggccuggccCCGCGGuG-GCUg -3'
miRNA:   3'- gCGGCGGCgGCGGGC------------GGCGCC-CgCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.