miRNA display CGI


Results 1 - 20 of 520 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8999 5' -70.9 NC_002512.2 + 184364 1.05 0.000505
Target:  5'- uCGCCGCCGCCGCCCGCCGCGGGCGCUu -3'
miRNA:   3'- -GCGGCGGCGGCGGGCGGCGCCCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 37276 0.93 0.004062
Target:  5'- gGCCGCCGUCGCCCGCCGCGGcGCGCc -3'
miRNA:   3'- gCGGCGGCGGCGGGCGGCGCC-CGCGa -5'
8999 5' -70.9 NC_002512.2 + 2271 0.87 0.013459
Target:  5'- uCGCCGCCGCCGCCCGCCcuccggccgcuGCGGGUGg- -3'
miRNA:   3'- -GCGGCGGCGGCGGGCGG-----------CGCCCGCga -5'
8999 5' -70.9 NC_002512.2 + 129205 0.84 0.020358
Target:  5'- gGCCGCCGCCGCUgGCCGCGGagaacgaacGCGCg -3'
miRNA:   3'- gCGGCGGCGGCGGgCGGCGCC---------CGCGa -5'
8999 5' -70.9 NC_002512.2 + 10466 0.83 0.022986
Target:  5'- gGCCGCCGCCGCCCcgGgCGUGGGCGUc -3'
miRNA:   3'- gCGGCGGCGGCGGG--CgGCGCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 83783 0.83 0.022986
Target:  5'- gCGCCGCCGCCG-CCGCCGaggaccgcguCGGGCGCg -3'
miRNA:   3'- -GCGGCGGCGGCgGGCGGC----------GCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 69054 0.82 0.027236
Target:  5'- gCGCCGCCgGCCGCCCGCCuGCuGGUGCc -3'
miRNA:   3'- -GCGGCGG-CGGCGGGCGG-CGcCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 103120 0.82 0.028586
Target:  5'- uCGCCGCCGCCGCCgCGCCcCGaGGCGUc -3'
miRNA:   3'- -GCGGCGGCGGCGG-GCGGcGC-CCGCGa -5'
8999 5' -70.9 NC_002512.2 + 222502 0.82 0.029286
Target:  5'- gGCCGCCuucugcgccugGCCGCCCGCCGCGGcCGCc -3'
miRNA:   3'- gCGGCGG-----------CGGCGGGCGGCGCCcGCGa -5'
8999 5' -70.9 NC_002512.2 + 154612 0.81 0.036393
Target:  5'- cCGCCGCCGCCGCCguCGCCGCcaucguggggacGGGaCGCg -3'
miRNA:   3'- -GCGGCGGCGGCGG--GCGGCG------------CCC-GCGa -5'
8999 5' -70.9 NC_002512.2 + 194614 0.8 0.040072
Target:  5'- cCGCCGCCGCgGCCguCGCCGCGGGgGa- -3'
miRNA:   3'- -GCGGCGGCGgCGG--GCGGCGCCCgCga -5'
8999 5' -70.9 NC_002512.2 + 72790 0.8 0.041047
Target:  5'- aCGUCGCCGggacggGCCCGCCGUGGGCGCc -3'
miRNA:   3'- -GCGGCGGCgg----CGGGCGGCGCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 205039 0.8 0.041047
Target:  5'- gCGuCCGCCGCCGaCCgGCCGCGGGCcCg -3'
miRNA:   3'- -GC-GGCGGCGGC-GGgCGGCGCCCGcGa -5'
8999 5' -70.9 NC_002512.2 + 148524 0.8 0.044114
Target:  5'- gGCCGCCGcCCGCCCcgGCCGCGagggaGGCGCc -3'
miRNA:   3'- gCGGCGGC-GGCGGG--CGGCGC-----CCGCGa -5'
8999 5' -70.9 NC_002512.2 + 81798 0.8 0.044114
Target:  5'- cCGCCGCCGCCGCCgggggacggaCGaCCGCGGcGCGUc -3'
miRNA:   3'- -GCGGCGGCGGCGG----------GC-GGCGCC-CGCGa -5'
8999 5' -70.9 NC_002512.2 + 6320 0.79 0.046281
Target:  5'- gGUgGCCGCCGCCCGCgGggggacCGGGCGCg -3'
miRNA:   3'- gCGgCGGCGGCGGGCGgC------GCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 155076 0.79 0.046281
Target:  5'- cCGCCGCCGCUGCCgggUGCC-CGGGCGUc -3'
miRNA:   3'- -GCGGCGGCGGCGG---GCGGcGCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 41243 0.79 0.049729
Target:  5'- cCGCCGCCGCCGCCggCGCCcuuGCGGcccgaGCGCUc -3'
miRNA:   3'- -GCGGCGGCGGCGG--GCGG---CGCC-----CGCGA- -5'
8999 5' -70.9 NC_002512.2 + 110642 0.79 0.050932
Target:  5'- uCGCCgggauccaGCCGCCGCUCGaCCGCGGGCaGCc -3'
miRNA:   3'- -GCGG--------CGGCGGCGGGC-GGCGCCCG-CGa -5'
8999 5' -70.9 NC_002512.2 + 133667 0.79 0.050932
Target:  5'- cCGCCGCCGCCGCggCCGCCGUGGccgaccuCGCg -3'
miRNA:   3'- -GCGGCGGCGGCG--GGCGGCGCCc------GCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.