miRNA display CGI


Results 1 - 20 of 520 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8999 5' -70.9 NC_002512.2 + 56 0.66 0.386136
Target:  5'- gGCUuuGCgG-CGUCgGUCGCGGGCGCg -3'
miRNA:   3'- gCGG--CGgCgGCGGgCGGCGCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 1304 0.66 0.385401
Target:  5'- gCGCCuGCCGCCGacaCGaCCGCGGuaaggaaGCGUc -3'
miRNA:   3'- -GCGG-CGGCGGCgg-GC-GGCGCC-------CGCGa -5'
8999 5' -70.9 NC_002512.2 + 1823 0.72 0.156187
Target:  5'- cCGUCGUcucccgCGCCGCagCCGuCCGCGGGCGUc -3'
miRNA:   3'- -GCGGCG------GCGGCG--GGC-GGCGCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 2108 0.7 0.217624
Target:  5'- -aCgGCCGCgGCUCgGUCGCGGGCGUc -3'
miRNA:   3'- gcGgCGGCGgCGGG-CGGCGCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 2215 0.73 0.12847
Target:  5'- gGUCGCCgGCgGCgCCGCCGCucuuccuccggacccGGGCGCUc -3'
miRNA:   3'- gCGGCGG-CGgCG-GGCGGCG---------------CCCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 2271 0.87 0.013459
Target:  5'- uCGCCGCCGCCGCCCGCCcuccggccgcuGCGGGUGg- -3'
miRNA:   3'- -GCGGCGGCGGCGGGCGG-----------CGCCCGCga -5'
8999 5' -70.9 NC_002512.2 + 2352 0.66 0.36027
Target:  5'- cCGCCcuccucCCGcCCGUCCGCCGCcggacucucccccccGGGuCGCg -3'
miRNA:   3'- -GCGGc-----GGC-GGCGGGCGGCG---------------CCC-GCGa -5'
8999 5' -70.9 NC_002512.2 + 2675 0.72 0.167067
Target:  5'- gGuCCGCCGCCuccugGUCCGCgCGCGGGaGCg -3'
miRNA:   3'- gC-GGCGGCGG-----CGGGCG-GCGCCCgCGa -5'
8999 5' -70.9 NC_002512.2 + 2802 0.75 0.098722
Target:  5'- gGCCgGCgGCCGgcgggaCCCGgCGCGGGCGCg -3'
miRNA:   3'- gCGG-CGgCGGC------GGGCgGCGCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 3138 0.66 0.378829
Target:  5'- gGCCGCaCGCC-UCCGCCGUcuccGGGacaGCc -3'
miRNA:   3'- gCGGCG-GCGGcGGGCGGCG----CCCg--CGa -5'
8999 5' -70.9 NC_002512.2 + 3179 0.73 0.142679
Target:  5'- gGCCucCCGUCGCucgacgCCGCCGCGGGCGaCg -3'
miRNA:   3'- gCGGc-GGCGGCG------GGCGGCGCCCGC-Ga -5'
8999 5' -70.9 NC_002512.2 + 3363 0.67 0.34371
Target:  5'- cCGCUcaGaCCGuCCGCCCGCucCGCGGG-GCc -3'
miRNA:   3'- -GCGG--C-GGC-GGCGGGCG--GCGCCCgCGa -5'
8999 5' -70.9 NC_002512.2 + 3505 0.67 0.350543
Target:  5'- gCGCCGUCGUCGgcccuccaCCCGagcCCGCGGG-GCc -3'
miRNA:   3'- -GCGGCGGCGGC--------GGGC---GGCGCCCgCGa -5'
8999 5' -70.9 NC_002512.2 + 4085 0.69 0.252805
Target:  5'- gGCCaCCcgGCCGCCCGCgGCccggccGGCGCa -3'
miRNA:   3'- gCGGcGG--CGGCGGGCGgCGc-----CCGCGa -5'
8999 5' -70.9 NC_002512.2 + 4167 0.66 0.401025
Target:  5'- aGUCGCCGCgGCU---CGCGGGCGaCa -3'
miRNA:   3'- gCGGCGGCGgCGGgcgGCGCCCGC-Ga -5'
8999 5' -70.9 NC_002512.2 + 4805 0.66 0.386136
Target:  5'- gGuuGCUGCgGCagCUGCUGCGGGaCGUg -3'
miRNA:   3'- gCggCGGCGgCG--GGCGGCGCCC-GCGa -5'
8999 5' -70.9 NC_002512.2 + 4838 0.68 0.302889
Target:  5'- gCGCCGCCGaggagCGCggccaucgcgggguUCGCCGCGugcGGCGCc -3'
miRNA:   3'- -GCGGCGGCg----GCG--------------GGCGGCGC---CCGCGa -5'
8999 5' -70.9 NC_002512.2 + 4913 0.77 0.063119
Target:  5'- gCGCCGCCGCCG-CCGCCcaGCGGGUagacgGCg -3'
miRNA:   3'- -GCGGCGGCGGCgGGCGG--CGCCCG-----CGa -5'
8999 5' -70.9 NC_002512.2 + 5085 0.71 0.178622
Target:  5'- gGUCGUCGUCGCCgGCgucggCGCGGGCGg- -3'
miRNA:   3'- gCGGCGGCGGCGGgCG-----GCGCCCGCga -5'
8999 5' -70.9 NC_002512.2 + 5726 0.66 0.393535
Target:  5'- cCGCgCGCCcCCGcCCCGCCucacGCGuccgccucccGGCGCg -3'
miRNA:   3'- -GCG-GCGGcGGC-GGGCGG----CGC----------CCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.