miRNA display CGI


Results 1 - 20 of 520 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8999 5' -70.9 NC_002512.2 + 229460 0.66 0.386136
Target:  5'- gGCUuuGCgG-CGUCgGUCGCGGGCGCg -3'
miRNA:   3'- gCGG--CGgCgGCGGgCGGCGCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 228119 0.69 0.237184
Target:  5'- gGCCGCaaCGUCGUgcugggCGCCGaCGGGCGCg -3'
miRNA:   3'- gCGGCG--GCGGCGg-----GCGGC-GCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 227803 0.69 0.252805
Target:  5'- cCGcCCGCUcCCGCCCGgCGUGGacuccGCGCUc -3'
miRNA:   3'- -GC-GGCGGcGGCGGGCgGCGCC-----CGCGA- -5'
8999 5' -70.9 NC_002512.2 + 227680 0.68 0.268699
Target:  5'- gCGCCGCCGgCGaCCgagacgacgacggCGgCGgGGGCGCg -3'
miRNA:   3'- -GCGGCGGCgGC-GG-------------GCgGCgCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 227595 0.66 0.356079
Target:  5'- aGCC-CCGCCaCCCGCagcggccggaggGCGGGCGg- -3'
miRNA:   3'- gCGGcGGCGGcGGGCGg-----------CGCCCGCga -5'
8999 5' -70.9 NC_002512.2 + 227408 0.7 0.203872
Target:  5'- gGCCGCCcggaCCuacuCUCGCgCGCGGGCGCg -3'
miRNA:   3'- gCGGCGGc---GGc---GGGCG-GCGCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 227083 0.71 0.190881
Target:  5'- gCGCCGggucCCGCCGgCCGCCGgcCGGGUcggGCUc -3'
miRNA:   3'- -GCGGC----GGCGGCgGGCGGC--GCCCG---CGA- -5'
8999 5' -70.9 NC_002512.2 + 227047 0.75 0.103424
Target:  5'- uGCCGCaGCUGCCCGCCGUcguccGGGCccGCg -3'
miRNA:   3'- gCGGCGgCGGCGGGCGGCG-----CCCG--CGa -5'
8999 5' -70.9 NC_002512.2 + 226820 0.78 0.057389
Target:  5'- gGCCGCCGCCG-CCGCCGCGucCGCc -3'
miRNA:   3'- gCGGCGGCGGCgGGCGGCGCccGCGa -5'
8999 5' -70.9 NC_002512.2 + 226688 0.75 0.096448
Target:  5'- gCGCCggGCCGUCGCCCGCgGC-GGCGUc -3'
miRNA:   3'- -GCGG--CGGCGGCGGGCGgCGcCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 225789 0.71 0.182629
Target:  5'- gGCUG-CGCCGgCCggGCCGCGGGCGg- -3'
miRNA:   3'- gCGGCgGCGGCgGG--CGGCGCCCGCga -5'
8999 5' -70.9 NC_002512.2 + 225730 0.66 0.357472
Target:  5'- aGCCGCgGCgacuCGCUCaGUCG-GGGCGCg -3'
miRNA:   3'- gCGGCGgCG----GCGGG-CGGCgCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 225482 0.76 0.08381
Target:  5'- cCGCCGUCGaCCGCgaucuacggggCCGCCGCGGGgGUc -3'
miRNA:   3'- -GCGGCGGC-GGCG-----------GGCGGCGCCCgCGa -5'
8999 5' -70.9 NC_002512.2 + 225308 0.7 0.217624
Target:  5'- gCGCCGCCuccuccGCCGCCCcagacgccgcaGCCGuCGGucGCGCc -3'
miRNA:   3'- -GCGGCGG------CGGCGGG-----------CGGC-GCC--CGCGa -5'
8999 5' -70.9 NC_002512.2 + 225090 0.68 0.280705
Target:  5'- aGCUGCCGCaGCaaCCGUCGCaaccGGCGCa -3'
miRNA:   3'- gCGGCGGCGgCG--GGCGGCGc---CCGCGa -5'
8999 5' -70.9 NC_002512.2 + 224801 0.72 0.167067
Target:  5'- gCGCCGaCGCCGgCgacgacgaccaaCGCCGCGGGCGg- -3'
miRNA:   3'- -GCGGCgGCGGCgG------------GCGGCGCCCGCga -5'
8999 5' -70.9 NC_002512.2 + 224718 0.71 0.182629
Target:  5'- gGCCgGCCGCCGCCCcgGUCGCGc-CGCUg -3'
miRNA:   3'- gCGG-CGGCGGCGGG--CGGCGCccGCGA- -5'
8999 5' -70.9 NC_002512.2 + 224676 0.66 0.371615
Target:  5'- cCGCCGCCGUCGgCUGgcCCGCGGuccUGCc -3'
miRNA:   3'- -GCGGCGGCGGCgGGC--GGCGCCc--GCGa -5'
8999 5' -70.9 NC_002512.2 + 224344 0.68 0.304745
Target:  5'- gCGgCGCCG-CGCCgggGUCGCGGGCGg- -3'
miRNA:   3'- -GCgGCGGCgGCGGg--CGGCGCCCGCga -5'
8999 5' -70.9 NC_002512.2 + 223549 0.69 0.242299
Target:  5'- cCGCgGCCcCgCGCCCGguccccCCGCGGGCGg- -3'
miRNA:   3'- -GCGgCGGcG-GCGGGC------GGCGCCCGCga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.