miRNA display CGI


Results 21 - 40 of 520 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8999 5' -70.9 NC_002512.2 + 5809 0.67 0.336974
Target:  5'- -aCCGCCGCCGCCCcguuCgGC-GGCGUc -3'
miRNA:   3'- gcGGCGGCGGCGGGc---GgCGcCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 6073 0.68 0.29859
Target:  5'- gCGCCGUCGUCGUCC-CgGCGGuCGCc -3'
miRNA:   3'- -GCGGCGGCGGCGGGcGgCGCCcGCGa -5'
8999 5' -70.9 NC_002512.2 + 6320 0.79 0.046281
Target:  5'- gGUgGCCGCCGCCCGCgGggggacCGGGCGCg -3'
miRNA:   3'- gCGgCGGCGGCGGGCGgC------GCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 7247 0.71 0.182629
Target:  5'- gGCCGUCGCggcggagcggCGUCCGUCGggauCGGGCGCg -3'
miRNA:   3'- gCGGCGGCG----------GCGGGCGGC----GCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 7346 0.66 0.393535
Target:  5'- uCGCCGuaGCCccgGCCCaccgcgacggcgGCCGCGGcGgGCg -3'
miRNA:   3'- -GCGGCggCGG---CGGG------------CGGCGCC-CgCGa -5'
8999 5' -70.9 NC_002512.2 + 7471 0.72 0.149294
Target:  5'- gCGCgGCUGCCGgccCCCGCCGaagcCGcGGCGCUc -3'
miRNA:   3'- -GCGgCGGCGGC---GGGCGGC----GC-CCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 7706 0.66 0.378829
Target:  5'- aCGCCgGCCGCgGCCCGggaGUaGGCGUc -3'
miRNA:   3'- -GCGG-CGGCGgCGGGCgg-CGcCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 8130 0.66 0.401025
Target:  5'- gGCCGCCcaGCUGCCguucgacggcgCGuCCGCcaGGCGCUc -3'
miRNA:   3'- gCGGCGG--CGGCGG-----------GC-GGCGc-CCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 8729 0.68 0.274936
Target:  5'- gGCCGCgCGCgccCGCCCGUCGacgacgGGGaCGCg -3'
miRNA:   3'- gCGGCG-GCG---GCGGGCGGCg-----CCC-GCGa -5'
8999 5' -70.9 NC_002512.2 + 8823 0.67 0.310997
Target:  5'- cCGCCGCCggagcuuggGCCagacggGCUCGCUGCcGGGCGg- -3'
miRNA:   3'- -GCGGCGG---------CGG------CGGGCGGCG-CCCGCga -5'
8999 5' -70.9 NC_002512.2 + 9685 0.7 0.212954
Target:  5'- gGCCGCCGUCggGCCC-CgGCGGGgGUUc -3'
miRNA:   3'- gCGGCGGCGG--CGGGcGgCGCCCgCGA- -5'
8999 5' -70.9 NC_002512.2 + 9760 0.68 0.29859
Target:  5'- aGCCGgacCCGCCGCC--CCGCGuGGCgGCUc -3'
miRNA:   3'- gCGGC---GGCGGCGGgcGGCGC-CCG-CGA- -5'
8999 5' -70.9 NC_002512.2 + 10432 0.72 0.152705
Target:  5'- gCGUCGUCGCCGUCgGgCaCGgGGGCGCg -3'
miRNA:   3'- -GCGGCGGCGGCGGgC-G-GCgCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 10466 0.83 0.022986
Target:  5'- gGCCGCCGCCGCCCcgGgCGUGGGCGUc -3'
miRNA:   3'- gCGGCGGCGGCGGG--CgGCGCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 10762 0.71 0.190881
Target:  5'- aGCgCGUCGUCGgcCCCGCCGCGguaGGCGUa -3'
miRNA:   3'- gCG-GCGGCGGC--GGGCGGCGC---CCGCGa -5'
8999 5' -70.9 NC_002512.2 + 10989 0.69 0.246981
Target:  5'- aGCCGCC-CCGCgUGgCGCgcgaugaGGGCGCg -3'
miRNA:   3'- gCGGCGGcGGCGgGCgGCG-------CCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 11239 0.69 0.237184
Target:  5'- -uCCGCCuCCGUCCGCC--GGGCGCg -3'
miRNA:   3'- gcGGCGGcGGCGGGCGGcgCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 11664 0.76 0.07996
Target:  5'- uCGgCGCCGCgGCCCGCCGCGgcccgaGGCGg- -3'
miRNA:   3'- -GCgGCGGCGgCGGGCGGCGC------CCGCga -5'
8999 5' -70.9 NC_002512.2 + 12048 0.71 0.195129
Target:  5'- cCGCUGCCGCCucugccgaaccGCCCGCCGUcgacgaucGGGacgGCg -3'
miRNA:   3'- -GCGGCGGCGG-----------CGGGCGGCG--------CCCg--CGa -5'
8999 5' -70.9 NC_002512.2 + 12096 0.7 0.20837
Target:  5'- aCGCCGauCCGCCaGCCgGCCGCGaccccGGCGaCg -3'
miRNA:   3'- -GCGGC--GGCGG-CGGgCGGCGC-----CCGC-Ga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.