Results 21 - 40 of 520 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8999 | 5' | -70.9 | NC_002512.2 | + | 5809 | 0.67 | 0.336974 |
Target: 5'- -aCCGCCGCCGCCCcguuCgGC-GGCGUc -3' miRNA: 3'- gcGGCGGCGGCGGGc---GgCGcCCGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 6073 | 0.68 | 0.29859 |
Target: 5'- gCGCCGUCGUCGUCC-CgGCGGuCGCc -3' miRNA: 3'- -GCGGCGGCGGCGGGcGgCGCCcGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 6320 | 0.79 | 0.046281 |
Target: 5'- gGUgGCCGCCGCCCGCgGggggacCGGGCGCg -3' miRNA: 3'- gCGgCGGCGGCGGGCGgC------GCCCGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 7247 | 0.71 | 0.182629 |
Target: 5'- gGCCGUCGCggcggagcggCGUCCGUCGggauCGGGCGCg -3' miRNA: 3'- gCGGCGGCG----------GCGGGCGGC----GCCCGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 7346 | 0.66 | 0.393535 |
Target: 5'- uCGCCGuaGCCccgGCCCaccgcgacggcgGCCGCGGcGgGCg -3' miRNA: 3'- -GCGGCggCGG---CGGG------------CGGCGCC-CgCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 7471 | 0.72 | 0.149294 |
Target: 5'- gCGCgGCUGCCGgccCCCGCCGaagcCGcGGCGCUc -3' miRNA: 3'- -GCGgCGGCGGC---GGGCGGC----GC-CCGCGA- -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 7706 | 0.66 | 0.378829 |
Target: 5'- aCGCCgGCCGCgGCCCGggaGUaGGCGUc -3' miRNA: 3'- -GCGG-CGGCGgCGGGCgg-CGcCCGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 8130 | 0.66 | 0.401025 |
Target: 5'- gGCCGCCcaGCUGCCguucgacggcgCGuCCGCcaGGCGCUc -3' miRNA: 3'- gCGGCGG--CGGCGG-----------GC-GGCGc-CCGCGA- -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 8729 | 0.68 | 0.274936 |
Target: 5'- gGCCGCgCGCgccCGCCCGUCGacgacgGGGaCGCg -3' miRNA: 3'- gCGGCG-GCG---GCGGGCGGCg-----CCC-GCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 8823 | 0.67 | 0.310997 |
Target: 5'- cCGCCGCCggagcuuggGCCagacggGCUCGCUGCcGGGCGg- -3' miRNA: 3'- -GCGGCGG---------CGG------CGGGCGGCG-CCCGCga -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 9685 | 0.7 | 0.212954 |
Target: 5'- gGCCGCCGUCggGCCC-CgGCGGGgGUUc -3' miRNA: 3'- gCGGCGGCGG--CGGGcGgCGCCCgCGA- -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 9760 | 0.68 | 0.29859 |
Target: 5'- aGCCGgacCCGCCGCC--CCGCGuGGCgGCUc -3' miRNA: 3'- gCGGC---GGCGGCGGgcGGCGC-CCG-CGA- -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 10432 | 0.72 | 0.152705 |
Target: 5'- gCGUCGUCGCCGUCgGgCaCGgGGGCGCg -3' miRNA: 3'- -GCGGCGGCGGCGGgC-G-GCgCCCGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 10466 | 0.83 | 0.022986 |
Target: 5'- gGCCGCCGCCGCCCcgGgCGUGGGCGUc -3' miRNA: 3'- gCGGCGGCGGCGGG--CgGCGCCCGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 10762 | 0.71 | 0.190881 |
Target: 5'- aGCgCGUCGUCGgcCCCGCCGCGguaGGCGUa -3' miRNA: 3'- gCG-GCGGCGGC--GGGCGGCGC---CCGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 10989 | 0.69 | 0.246981 |
Target: 5'- aGCCGCC-CCGCgUGgCGCgcgaugaGGGCGCg -3' miRNA: 3'- gCGGCGGcGGCGgGCgGCG-------CCCGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 11239 | 0.69 | 0.237184 |
Target: 5'- -uCCGCCuCCGUCCGCC--GGGCGCg -3' miRNA: 3'- gcGGCGGcGGCGGGCGGcgCCCGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 11664 | 0.76 | 0.07996 |
Target: 5'- uCGgCGCCGCgGCCCGCCGCGgcccgaGGCGg- -3' miRNA: 3'- -GCgGCGGCGgCGGGCGGCGC------CCGCga -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 12048 | 0.71 | 0.195129 |
Target: 5'- cCGCUGCCGCCucugccgaaccGCCCGCCGUcgacgaucGGGacgGCg -3' miRNA: 3'- -GCGGCGGCGG-----------CGGGCGGCG--------CCCg--CGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 12096 | 0.7 | 0.20837 |
Target: 5'- aCGCCGauCCGCCaGCCgGCCGCGaccccGGCGaCg -3' miRNA: 3'- -GCGGC--GGCGG-CGGgCGGCGC-----CCGC-Ga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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