miRNA display CGI


Results 41 - 60 of 520 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8999 5' -70.9 NC_002512.2 + 12792 0.69 0.237184
Target:  5'- gCGCCcCCGCUGCCC-CUGCGGaUGCUc -3'
miRNA:   3'- -GCGGcGGCGGCGGGcGGCGCCcGCGA- -5'
8999 5' -70.9 NC_002512.2 + 13327 0.69 0.247506
Target:  5'- gGcCCGCCGCaugcuggcguuCGCgCGCCGCugcuacgacucGGGCGCg -3'
miRNA:   3'- gC-GGCGGCG-----------GCGgGCGGCG-----------CCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 15661 0.7 0.212954
Target:  5'- aGCCGacgaGCCGCCUgacgucccgggGCaGCGGGCGCa -3'
miRNA:   3'- gCGGCgg--CGGCGGG-----------CGgCGCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 16249 0.74 0.121587
Target:  5'- uCGUCGCCGUCGCCCGCgGCGGcCa-- -3'
miRNA:   3'- -GCGGCGGCGGCGGGCGgCGCCcGcga -5'
8999 5' -70.9 NC_002512.2 + 16524 0.69 0.247506
Target:  5'- -aCUGUCGCCGCCaG-CGCGGGCGUc -3'
miRNA:   3'- gcGGCGGCGGCGGgCgGCGCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 16721 0.69 0.246981
Target:  5'- uGCCGaCCacgcagaGCUGaCCCGCCaugaGCGGGUGCg -3'
miRNA:   3'- gCGGC-GG-------CGGC-GGGCGG----CGCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 17738 0.66 0.364496
Target:  5'- -cCCGCCGCCaguGCCCGCCGaCGcacaGGUGa- -3'
miRNA:   3'- gcGGCGGCGG---CGGGCGGC-GC----CCGCga -5'
8999 5' -70.9 NC_002512.2 + 18587 0.67 0.317346
Target:  5'- gCGCuCGgaCCGCCGCauGCCGCacucGGCGCa -3'
miRNA:   3'- -GCG-GC--GGCGGCGggCGGCGc---CCGCGa -5'
8999 5' -70.9 NC_002512.2 + 19095 0.67 0.330334
Target:  5'- uGCCGUagugGCCGUUgGCCGUGGcgaaGCGCg -3'
miRNA:   3'- gCGGCGg---CGGCGGgCGGCGCC----CGCGa -5'
8999 5' -70.9 NC_002512.2 + 20111 0.66 0.378103
Target:  5'- aGCCGCCGg-GCuuGCCgaaagacGCGGaGCGCg -3'
miRNA:   3'- gCGGCGGCggCGggCGG-------CGCC-CGCGa -5'
8999 5' -70.9 NC_002512.2 + 20255 0.67 0.310367
Target:  5'- aGCCGUCGUCGUCCucguccgGCCGCaGGuCGUa -3'
miRNA:   3'- gCGGCGGCGGCGGG-------CGGCGcCC-GCGa -5'
8999 5' -70.9 NC_002512.2 + 22279 0.69 0.252805
Target:  5'- uCGCCGCCGCaGCagCCGCCGCcGuCGCa -3'
miRNA:   3'- -GCGGCGGCGgCG--GGCGGCGcCcGCGa -5'
8999 5' -70.9 NC_002512.2 + 22965 0.69 0.263682
Target:  5'- uGCCaGCCGUUcaucaCCCGCgGCGGGaCGCg -3'
miRNA:   3'- gCGG-CGGCGGc----GGGCGgCGCCC-GCGa -5'
8999 5' -70.9 NC_002512.2 + 24179 0.7 0.203872
Target:  5'- --gUGCCGCCGCCUGUCGCcGGUGUc -3'
miRNA:   3'- gcgGCGGCGGCGGGCGGCGcCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 24246 0.68 0.274936
Target:  5'- cCGCCGaCGgCGUCCcCCGCGGGCa-- -3'
miRNA:   3'- -GCGGCgGCgGCGGGcGGCGCCCGcga -5'
8999 5' -70.9 NC_002512.2 + 24486 0.69 0.247506
Target:  5'- gCGCCGgaguuCCGCUGCgCCGCCGCcuuccuGGGC-CUg -3'
miRNA:   3'- -GCGGC-----GGCGGCG-GGCGGCG------CCCGcGA- -5'
8999 5' -70.9 NC_002512.2 + 25000 0.67 0.317346
Target:  5'- cCGCuCGCCGUCcgagaGCUCGCCGuCGGuCGCg -3'
miRNA:   3'- -GCG-GCGGCGG-----CGGGCGGC-GCCcGCGa -5'
8999 5' -70.9 NC_002512.2 + 25074 0.7 0.225763
Target:  5'- aGCCGCCG-CGCCC-CCGggacgcggaccuccCGGGCGUc -3'
miRNA:   3'- gCGGCGGCgGCGGGcGGC--------------GCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 25184 0.7 0.203872
Target:  5'- cCGCCGUCGCCgacgucgcGUCCGCCGCGacGGaGCg -3'
miRNA:   3'- -GCGGCGGCGG--------CGGGCGGCGC--CCgCGa -5'
8999 5' -70.9 NC_002512.2 + 27220 0.67 0.323791
Target:  5'- aGUCGCCGCCGugcCCUGagggaGCGGGCcggGCUa -3'
miRNA:   3'- gCGGCGGCGGC---GGGCgg---CGCCCG---CGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.