miRNA display CGI


Results 41 - 60 of 520 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8999 5' -70.9 NC_002512.2 + 217807 0.66 0.364496
Target:  5'- uCGgCGUCGCCGuCCCGaucgucgaCgGCGGGCGg- -3'
miRNA:   3'- -GCgGCGGCGGC-GGGC--------GgCGCCCGCga -5'
8999 5' -70.9 NC_002512.2 + 217498 0.77 0.064636
Target:  5'- cCGCCGCCGCCGCCCGaaggcgagcuCgGgGGGuCGCg -3'
miRNA:   3'- -GCGGCGGCGGCGGGC----------GgCgCCC-GCGa -5'
8999 5' -70.9 NC_002512.2 + 216441 0.68 0.284801
Target:  5'- uCGCCGCCGCCcucuccaucgagaaGCCCagguaGCCGgCGucccacagggaGGCGCa -3'
miRNA:   3'- -GCGGCGGCGG--------------CGGG-----CGGC-GC-----------CCGCGa -5'
8999 5' -70.9 NC_002512.2 + 216210 0.7 0.203872
Target:  5'- cCGCgGCCGUCGCCuCGUC-CGGGaGCUg -3'
miRNA:   3'- -GCGgCGGCGGCGG-GCGGcGCCCgCGA- -5'
8999 5' -70.9 NC_002512.2 + 215382 0.66 0.370899
Target:  5'- uCGCCGUCGCCaGCCCcggcaccauguucGCCcuGCccuggcccaaGGGCGCc -3'
miRNA:   3'- -GCGGCGGCGG-CGGG-------------CGG--CG----------CCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 215103 0.69 0.249614
Target:  5'- uCGUCGCCGCCGCggccgaccgccagaaCgGCCGgGGuccGCGCg -3'
miRNA:   3'- -GCGGCGGCGGCG---------------GgCGGCgCC---CGCGa -5'
8999 5' -70.9 NC_002512.2 + 214927 0.68 0.292532
Target:  5'- cCGCgGCCGCgGCUUcguccucccgugGCCGCGGaCGCa -3'
miRNA:   3'- -GCGgCGGCGgCGGG------------CGGCGCCcGCGa -5'
8999 5' -70.9 NC_002512.2 + 214567 0.68 0.286571
Target:  5'- uCGCCGUCGUCcccuCCCGCC-UGGGCGaCg -3'
miRNA:   3'- -GCGGCGGCGGc---GGGCGGcGCCCGC-Ga -5'
8999 5' -70.9 NC_002512.2 + 213607 0.73 0.135712
Target:  5'- gGCCGCCGUCGCguccgguCCcugacucuuggccGCCGCGGGCGaCg -3'
miRNA:   3'- gCGGCGGCGGCG-------GG-------------CGGCGCCCGC-Ga -5'
8999 5' -70.9 NC_002512.2 + 212998 0.66 0.408606
Target:  5'- uCGCCGCgGCCGUCgGgCC-CGGG-GCc -3'
miRNA:   3'- -GCGGCGgCGGCGGgC-GGcGCCCgCGa -5'
8999 5' -70.9 NC_002512.2 + 212809 0.72 0.163367
Target:  5'- uGUCGCCGuuuucuccuuCCGCgCCGCCGggguUGGGCGCg -3'
miRNA:   3'- gCGGCGGC----------GGCG-GGCGGC----GCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 212443 0.69 0.237184
Target:  5'- gGCCgGCCgGCCGCgaCCGCCGCGaGGaggGCa -3'
miRNA:   3'- gCGG-CGG-CGGCG--GGCGGCGC-CCg--CGa -5'
8999 5' -70.9 NC_002512.2 + 212000 0.71 0.186715
Target:  5'- gGCCGCCGCCGCCuaucaCGUCcccCGGGCcCUg -3'
miRNA:   3'- gCGGCGGCGGCGG-----GCGGc--GCCCGcGA- -5'
8999 5' -70.9 NC_002512.2 + 211793 0.77 0.072762
Target:  5'- gGCCGCggggGCCGuCCCGCCGCGG-CGCa -3'
miRNA:   3'- gCGGCGg---CGGC-GGGCGGCGCCcGCGa -5'
8999 5' -70.9 NC_002512.2 + 211734 0.66 0.393535
Target:  5'- uGCCuCgGCCugGCCCGCgaCGCggcccGGGCGCUg -3'
miRNA:   3'- gCGGcGgCGG--CGGGCG--GCG-----CCCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 211432 0.67 0.317346
Target:  5'- gCGCUGCCcuuCUGCCCGgaGCucGGGCGCc -3'
miRNA:   3'- -GCGGCGGc--GGCGGGCggCG--CCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 211359 0.68 0.292532
Target:  5'- gCGCgGCCuGaCCGCCCGgCGCGGcaUGCUg -3'
miRNA:   3'- -GCGgCGG-C-GGCGGGCgGCGCCc-GCGA- -5'
8999 5' -70.9 NC_002512.2 + 211178 0.71 0.170843
Target:  5'- aGCgCGUCGCCGCCCuGCuCG-GGGUGCc -3'
miRNA:   3'- gCG-GCGGCGGCGGG-CG-GCgCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 209488 0.68 0.304745
Target:  5'- uGCuCGUCGCCGUCUacaGCgGCGGGgacCGCUg -3'
miRNA:   3'- gCG-GCGGCGGCGGG---CGgCGCCC---GCGA- -5'
8999 5' -70.9 NC_002512.2 + 209014 0.68 0.29859
Target:  5'- cCGUCGUCGCCGCCaugaGCGGG-GCg -3'
miRNA:   3'- -GCGGCGGCGGCGGgcggCGCCCgCGa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.