Results 41 - 60 of 520 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8999 | 5' | -70.9 | NC_002512.2 | + | 217807 | 0.66 | 0.364496 |
Target: 5'- uCGgCGUCGCCGuCCCGaucgucgaCgGCGGGCGg- -3' miRNA: 3'- -GCgGCGGCGGC-GGGC--------GgCGCCCGCga -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 217498 | 0.77 | 0.064636 |
Target: 5'- cCGCCGCCGCCGCCCGaaggcgagcuCgGgGGGuCGCg -3' miRNA: 3'- -GCGGCGGCGGCGGGC----------GgCgCCC-GCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 216441 | 0.68 | 0.284801 |
Target: 5'- uCGCCGCCGCCcucuccaucgagaaGCCCagguaGCCGgCGucccacagggaGGCGCa -3' miRNA: 3'- -GCGGCGGCGG--------------CGGG-----CGGC-GC-----------CCGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 216210 | 0.7 | 0.203872 |
Target: 5'- cCGCgGCCGUCGCCuCGUC-CGGGaGCUg -3' miRNA: 3'- -GCGgCGGCGGCGG-GCGGcGCCCgCGA- -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 215382 | 0.66 | 0.370899 |
Target: 5'- uCGCCGUCGCCaGCCCcggcaccauguucGCCcuGCccuggcccaaGGGCGCc -3' miRNA: 3'- -GCGGCGGCGG-CGGG-------------CGG--CG----------CCCGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 215103 | 0.69 | 0.249614 |
Target: 5'- uCGUCGCCGCCGCggccgaccgccagaaCgGCCGgGGuccGCGCg -3' miRNA: 3'- -GCGGCGGCGGCG---------------GgCGGCgCC---CGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 214927 | 0.68 | 0.292532 |
Target: 5'- cCGCgGCCGCgGCUUcguccucccgugGCCGCGGaCGCa -3' miRNA: 3'- -GCGgCGGCGgCGGG------------CGGCGCCcGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 214567 | 0.68 | 0.286571 |
Target: 5'- uCGCCGUCGUCcccuCCCGCC-UGGGCGaCg -3' miRNA: 3'- -GCGGCGGCGGc---GGGCGGcGCCCGC-Ga -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 213607 | 0.73 | 0.135712 |
Target: 5'- gGCCGCCGUCGCguccgguCCcugacucuuggccGCCGCGGGCGaCg -3' miRNA: 3'- gCGGCGGCGGCG-------GG-------------CGGCGCCCGC-Ga -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 212998 | 0.66 | 0.408606 |
Target: 5'- uCGCCGCgGCCGUCgGgCC-CGGG-GCc -3' miRNA: 3'- -GCGGCGgCGGCGGgC-GGcGCCCgCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 212809 | 0.72 | 0.163367 |
Target: 5'- uGUCGCCGuuuucuccuuCCGCgCCGCCGggguUGGGCGCg -3' miRNA: 3'- gCGGCGGC----------GGCG-GGCGGC----GCCCGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 212443 | 0.69 | 0.237184 |
Target: 5'- gGCCgGCCgGCCGCgaCCGCCGCGaGGaggGCa -3' miRNA: 3'- gCGG-CGG-CGGCG--GGCGGCGC-CCg--CGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 212000 | 0.71 | 0.186715 |
Target: 5'- gGCCGCCGCCGCCuaucaCGUCcccCGGGCcCUg -3' miRNA: 3'- gCGGCGGCGGCGG-----GCGGc--GCCCGcGA- -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 211793 | 0.77 | 0.072762 |
Target: 5'- gGCCGCggggGCCGuCCCGCCGCGG-CGCa -3' miRNA: 3'- gCGGCGg---CGGC-GGGCGGCGCCcGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 211734 | 0.66 | 0.393535 |
Target: 5'- uGCCuCgGCCugGCCCGCgaCGCggcccGGGCGCUg -3' miRNA: 3'- gCGGcGgCGG--CGGGCG--GCG-----CCCGCGA- -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 211432 | 0.67 | 0.317346 |
Target: 5'- gCGCUGCCcuuCUGCCCGgaGCucGGGCGCc -3' miRNA: 3'- -GCGGCGGc--GGCGGGCggCG--CCCGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 211359 | 0.68 | 0.292532 |
Target: 5'- gCGCgGCCuGaCCGCCCGgCGCGGcaUGCUg -3' miRNA: 3'- -GCGgCGG-C-GGCGGGCgGCGCCc-GCGA- -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 211178 | 0.71 | 0.170843 |
Target: 5'- aGCgCGUCGCCGCCCuGCuCG-GGGUGCc -3' miRNA: 3'- gCG-GCGGCGGCGGG-CG-GCgCCCGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 209488 | 0.68 | 0.304745 |
Target: 5'- uGCuCGUCGCCGUCUacaGCgGCGGGgacCGCUg -3' miRNA: 3'- gCG-GCGGCGGCGGG---CGgCGCCC---GCGA- -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 209014 | 0.68 | 0.29859 |
Target: 5'- cCGUCGUCGCCGCCaugaGCGGG-GCg -3' miRNA: 3'- -GCGGCGGCGGCGGgcggCGCCCgCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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