miRNA display CGI


Results 41 - 60 of 520 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8999 5' -70.9 NC_002512.2 + 11664 0.76 0.07996
Target:  5'- uCGgCGCCGCgGCCCGCCGCGgcccgaGGCGg- -3'
miRNA:   3'- -GCgGCGGCGgCGGGCGGCGC------CCGCga -5'
8999 5' -70.9 NC_002512.2 + 107894 0.76 0.07996
Target:  5'- gGCCGCCGCgaucuuccucuCGuCCCGCCgGCGGGCGg- -3'
miRNA:   3'- gCGGCGGCG-----------GC-GGGCGG-CGCCCGCga -5'
8999 5' -70.9 NC_002512.2 + 139252 0.76 0.07996
Target:  5'- gGCCGCggcgccgggucgCGCCGCCCgGCgCGCGGGgGCg -3'
miRNA:   3'- gCGGCG------------GCGGCGGG-CG-GCGCCCgCGa -5'
8999 5' -70.9 NC_002512.2 + 170056 0.76 0.081864
Target:  5'- gGCCGCCGCCGCCgCgGCCGCcuucuuGGGC-CUg -3'
miRNA:   3'- gCGGCGGCGGCGG-G-CGGCG------CCCGcGA- -5'
8999 5' -70.9 NC_002512.2 + 103446 0.76 0.081864
Target:  5'- gGCCGCCGCCG-UCGCCGgcCGGGCGg- -3'
miRNA:   3'- gCGGCGGCGGCgGGCGGC--GCCCGCga -5'
8999 5' -70.9 NC_002512.2 + 88589 0.76 0.081864
Target:  5'- uCGUCGCCGCCGgugCCGCCGUGcGCGCg -3'
miRNA:   3'- -GCGGCGGCGGCg--GGCGGCGCcCGCGa -5'
8999 5' -70.9 NC_002512.2 + 223489 0.76 0.08381
Target:  5'- cCGCCGCCGCCucccuGCCCGUCGCGacgaccacGGCGg- -3'
miRNA:   3'- -GCGGCGGCGG-----CGGGCGGCGC--------CCGCga -5'
8999 5' -70.9 NC_002512.2 + 225482 0.76 0.08381
Target:  5'- cCGCCGUCGaCCGCgaucuacggggCCGCCGCGGGgGUc -3'
miRNA:   3'- -GCGGCGGC-GGCG-----------GGCGGCGCCCgCGa -5'
8999 5' -70.9 NC_002512.2 + 200790 0.76 0.085801
Target:  5'- gGCCGCCGCCGCCgaagaCGagGCGGGaCGCg -3'
miRNA:   3'- gCGGCGGCGGCGG-----GCggCGCCC-GCGa -5'
8999 5' -70.9 NC_002512.2 + 106745 0.75 0.089289
Target:  5'- gCGgCGCCGCCGCCCcgucccccgggacgGCCGCcgacGGCGCg -3'
miRNA:   3'- -GCgGCGGCGGCGGG--------------CGGCGc---CCGCGa -5'
8999 5' -70.9 NC_002512.2 + 114007 0.75 0.089918
Target:  5'- cCGCCGCCGUCGgCC-CCGCagcggcaccGGGCGCg -3'
miRNA:   3'- -GCGGCGGCGGCgGGcGGCG---------CCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 92106 0.75 0.090764
Target:  5'- cCGCCGagCGCCGaCCuccagaccgcggacaCGCUGCGGGCGCUg -3'
miRNA:   3'- -GCGGCg-GCGGC-GG---------------GCGGCGCCCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 56240 0.75 0.090764
Target:  5'- uGCUGCCGCCGCCCccggacccgggguucGCCGCcgcggcggaGGCGCUc -3'
miRNA:   3'- gCGGCGGCGGCGGG---------------CGGCGc--------CCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 128901 0.75 0.092047
Target:  5'- gGCCuGgCGauCCGCCCGCCGCGGGaGCUg -3'
miRNA:   3'- gCGG-CgGC--GGCGGGCGGCGCCCgCGA- -5'
8999 5' -70.9 NC_002512.2 + 129279 0.75 0.094223
Target:  5'- aGCUGUCGUgCGUCgaGCCGCGGGCGCg -3'
miRNA:   3'- gCGGCGGCG-GCGGg-CGGCGCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 226688 0.75 0.096448
Target:  5'- gCGCCggGCCGUCGCCCGCgGC-GGCGUc -3'
miRNA:   3'- -GCGG--CGGCGGCGGGCGgCGcCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 220371 0.75 0.098722
Target:  5'- gGCCGCCGCCGCCgUGCUG-GGGCcgGCc -3'
miRNA:   3'- gCGGCGGCGGCGG-GCGGCgCCCG--CGa -5'
8999 5' -70.9 NC_002512.2 + 99722 0.75 0.098722
Target:  5'- gCGCCGUCGCgggccgGCCCGCCGCcGGGCcccGCg -3'
miRNA:   3'- -GCGGCGGCGg-----CGGGCGGCG-CCCG---CGa -5'
8999 5' -70.9 NC_002512.2 + 2802 0.75 0.098722
Target:  5'- gGCCgGCgGCCGgcgggaCCCGgCGCGGGCGCg -3'
miRNA:   3'- gCGG-CGgCGGC------GGGCgGCGCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 102796 0.75 0.098722
Target:  5'- cCGCCGCCGCCGCCCuCCGCuccGGGa--- -3'
miRNA:   3'- -GCGGCGGCGGCGGGcGGCG---CCCgcga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.