miRNA display CGI


Results 41 - 60 of 520 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8999 5' -70.9 NC_002512.2 + 103120 0.82 0.028586
Target:  5'- uCGCCGCCGCCGCCgCGCCcCGaGGCGUc -3'
miRNA:   3'- -GCGGCGGCGGCGG-GCGGcGC-CCGCGa -5'
8999 5' -70.9 NC_002512.2 + 69054 0.82 0.027236
Target:  5'- gCGCCGCCgGCCGCCCGCCuGCuGGUGCc -3'
miRNA:   3'- -GCGGCGG-CGGCGGGCGG-CGcCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 83783 0.83 0.022986
Target:  5'- gCGCCGCCGCCG-CCGCCGaggaccgcguCGGGCGCg -3'
miRNA:   3'- -GCGGCGGCGGCgGGCGGC----------GCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 10466 0.83 0.022986
Target:  5'- gGCCGCCGCCGCCCcgGgCGUGGGCGUc -3'
miRNA:   3'- gCGGCGGCGGCGGG--CgGCGCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 2271 0.87 0.013459
Target:  5'- uCGCCGCCGCCGCCCGCCcuccggccgcuGCGGGUGg- -3'
miRNA:   3'- -GCGGCGGCGGCGGGCGG-----------CGCCCGCga -5'
8999 5' -70.9 NC_002512.2 + 96295 0.77 0.063119
Target:  5'- uGCCGCgGgCCG-CCGCCGCGGGCGg- -3'
miRNA:   3'- gCGGCGgC-GGCgGGCGGCGCCCGCga -5'
8999 5' -70.9 NC_002512.2 + 137342 0.77 0.063119
Target:  5'- aCGUCGUCGCCGCggCCGCCGCGGccggguagauccGCGCg -3'
miRNA:   3'- -GCGGCGGCGGCG--GGCGGCGCC------------CGCGa -5'
8999 5' -70.9 NC_002512.2 + 2802 0.75 0.098722
Target:  5'- gGCCgGCgGCCGgcgggaCCCGgCGCGGGCGCg -3'
miRNA:   3'- gCGG-CGgCGGC------GGGCgGCGCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 129279 0.75 0.094223
Target:  5'- aGCUGUCGUgCGUCgaGCCGCGGGCGCg -3'
miRNA:   3'- gCGGCGGCG-GCGGg-CGGCGCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 56240 0.75 0.090764
Target:  5'- uGCUGCCGCCGCCCccggacccgggguucGCCGCcgcggcggaGGCGCUc -3'
miRNA:   3'- gCGGCGGCGGCGGG---------------CGGCGc--------CCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 103446 0.76 0.081864
Target:  5'- gGCCGCCGCCG-UCGCCGgcCGGGCGg- -3'
miRNA:   3'- gCGGCGGCGGCgGGCGGC--GCCCGCga -5'
8999 5' -70.9 NC_002512.2 + 88589 0.76 0.081864
Target:  5'- uCGUCGCCGCCGgugCCGCCGUGcGCGCg -3'
miRNA:   3'- -GCGGCGGCGGCg--GGCGGCGCcCGCGa -5'
8999 5' -70.9 NC_002512.2 + 139252 0.76 0.07996
Target:  5'- gGCCGCggcgccgggucgCGCCGCCCgGCgCGCGGGgGCg -3'
miRNA:   3'- gCGGCG------------GCGGCGGG-CG-GCGCCCgCGa -5'
8999 5' -70.9 NC_002512.2 + 107894 0.76 0.07996
Target:  5'- gGCCGCCGCgaucuuccucuCGuCCCGCCgGCGGGCGg- -3'
miRNA:   3'- gCGGCGGCG-----------GC-GGGCGG-CGCCCGCga -5'
8999 5' -70.9 NC_002512.2 + 11664 0.76 0.07996
Target:  5'- uCGgCGCCGCgGCCCGCCGCGgcccgaGGCGg- -3'
miRNA:   3'- -GCgGCGGCGgCGGGCGGCGC------CCGCga -5'
8999 5' -70.9 NC_002512.2 + 76521 0.77 0.072762
Target:  5'- cCGCCaGCCGCCGCCCaGCCcaGCGGGaccCGCc -3'
miRNA:   3'- -GCGG-CGGCGGCGGG-CGG--CGCCC---GCGa -5'
8999 5' -70.9 NC_002512.2 + 70898 0.77 0.067775
Target:  5'- gGCCGCCGCCuccgcCCCGCCGUGGcCGCc -3'
miRNA:   3'- gCGGCGGCGGc----GGGCGGCGCCcGCGa -5'
8999 5' -70.9 NC_002512.2 + 86152 0.77 0.064636
Target:  5'- aCGCCGCgGCCGCCUccgaggcccuGCUGCGGGaGCUg -3'
miRNA:   3'- -GCGGCGgCGGCGGG----------CGGCGCCCgCGA- -5'
8999 5' -70.9 NC_002512.2 + 65431 0.77 0.064636
Target:  5'- gGUCGUCGCC-CCCGCCGaGGGCGCc -3'
miRNA:   3'- gCGGCGGCGGcGGGCGGCgCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 4913 0.77 0.063119
Target:  5'- gCGCCGCCGCCG-CCGCCcaGCGGGUagacgGCg -3'
miRNA:   3'- -GCGGCGGCGGCgGGCGG--CGCCCG-----CGa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.