Results 41 - 60 of 520 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
8999 | 5' | -70.9 | NC_002512.2 | + | 20111 | 0.66 | 0.378103 |
Target: 5'- aGCCGCCGg-GCuuGCCgaaagacGCGGaGCGCg -3' miRNA: 3'- gCGGCGGCggCGggCGG-------CGCC-CGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 129887 | 0.66 | 0.378829 |
Target: 5'- uCGCCGUCGCC-CUCGCCGaCGaucCGCUc -3' miRNA: 3'- -GCGGCGGCGGcGGGCGGC-GCcc-GCGA- -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 56 | 0.66 | 0.386136 |
Target: 5'- gGCUuuGCgG-CGUCgGUCGCGGGCGCg -3' miRNA: 3'- gCGG--CGgCgGCGGgCGGCGCCCGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 38857 | 0.66 | 0.404047 |
Target: 5'- gCGCCGCgCcCCGCCuCGCaggcaccucgguccgCGCGGGCaGUa -3' miRNA: 3'- -GCGGCG-GcGGCGG-GCG---------------GCGCCCG-CGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 82183 | 0.66 | 0.408606 |
Target: 5'- gGUCGagaGcCCGUCCGCCGuCGGGCcgGCg -3' miRNA: 3'- gCGGCgg-C-GGCGGGCGGC-GCCCG--CGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 5726 | 0.66 | 0.393535 |
Target: 5'- cCGCgCGCCcCCGcCCCGCCucacGCGuccgccucccGGCGCg -3' miRNA: 3'- -GCG-GCGGcGGC-GGGCGG----CGC----------CCGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 134653 | 0.66 | 0.39279 |
Target: 5'- aCGCCGUgGCCGagugcggggCCGacgcgauccgucaCCaGCGGGCGCUc -3' miRNA: 3'- -GCGGCGgCGGCg--------GGC-------------GG-CGCCCGCGA- -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 76898 | 0.66 | 0.386136 |
Target: 5'- cCGCUcCCGCCGaCCCGaCCG-GGGacCGCUc -3' miRNA: 3'- -GCGGcGGCGGC-GGGC-GGCgCCC--GCGA- -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 130572 | 0.66 | 0.408606 |
Target: 5'- uCGUCGUagGCCGCCgCGa-GCGGGCGg- -3' miRNA: 3'- -GCGGCGg-CGGCGG-GCggCGCCCGCga -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 111069 | 0.66 | 0.393535 |
Target: 5'- uGCCGCaucaCCGuguaggucauguCCCGCaUGCGGGUGCg -3' miRNA: 3'- gCGGCGgc--GGC------------GGGCG-GCGCCCGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 75625 | 0.66 | 0.378829 |
Target: 5'- gCGCaCGCgGgCaCgCGCaCGCGGGCGCUc -3' miRNA: 3'- -GCG-GCGgCgGcGgGCG-GCGCCCGCGA- -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 4167 | 0.66 | 0.401025 |
Target: 5'- aGUCGCCGCgGCU---CGCGGGCGaCa -3' miRNA: 3'- gCGGCGGCGgCGGgcgGCGCCCGC-Ga -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 1304 | 0.66 | 0.385401 |
Target: 5'- gCGCCuGCCGCCGacaCGaCCGCGGuaaggaaGCGUc -3' miRNA: 3'- -GCGG-CGGCGGCgg-GC-GGCGCC-------CGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 7706 | 0.66 | 0.378829 |
Target: 5'- aCGCCgGCCGCgGCCCGggaGUaGGCGUc -3' miRNA: 3'- -GCGG-CGGCGgCGGGCgg-CGcCCGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 101955 | 0.66 | 0.408606 |
Target: 5'- aGCUGguggcCCGCgGgCCCGCCGgCGGGCu-- -3' miRNA: 3'- gCGGC-----GGCGgC-GGGCGGC-GCCCGcga -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 80044 | 0.66 | 0.401025 |
Target: 5'- uCGUCGUCGUC-CUCGUcgCGCGGGuCGCUc -3' miRNA: 3'- -GCGGCGGCGGcGGGCG--GCGCCC-GCGA- -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 117513 | 0.66 | 0.386136 |
Target: 5'- gGCCGCCaCCGCCaucguGCCcaagguguccggGCuGGCGCUc -3' miRNA: 3'- gCGGCGGcGGCGGg----CGG------------CGcCCGCGA- -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 57739 | 0.66 | 0.378829 |
Target: 5'- aCGCaguagacCCGCUGCCCGUCGCGcuccucgucgacGGUGCc -3' miRNA: 3'- -GCGgc-----GGCGGCGGGCGGCGC------------CCGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 85638 | 0.66 | 0.393535 |
Target: 5'- cCGCUGCCGCCGCaCUuuCCaCGGGgGUUc -3' miRNA: 3'- -GCGGCGGCGGCG-GGc-GGcGCCCgCGA- -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 36981 | 0.66 | 0.378829 |
Target: 5'- gGCgGCU-CUGgaCCGCCGCGGaGCGCg -3' miRNA: 3'- gCGgCGGcGGCg-GGCGGCGCC-CGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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