miRNA display CGI


Results 41 - 60 of 520 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8999 5' -70.9 NC_002512.2 + 20111 0.66 0.378103
Target:  5'- aGCCGCCGg-GCuuGCCgaaagacGCGGaGCGCg -3'
miRNA:   3'- gCGGCGGCggCGggCGG-------CGCC-CGCGa -5'
8999 5' -70.9 NC_002512.2 + 129887 0.66 0.378829
Target:  5'- uCGCCGUCGCC-CUCGCCGaCGaucCGCUc -3'
miRNA:   3'- -GCGGCGGCGGcGGGCGGC-GCcc-GCGA- -5'
8999 5' -70.9 NC_002512.2 + 56 0.66 0.386136
Target:  5'- gGCUuuGCgG-CGUCgGUCGCGGGCGCg -3'
miRNA:   3'- gCGG--CGgCgGCGGgCGGCGCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 38857 0.66 0.404047
Target:  5'- gCGCCGCgCcCCGCCuCGCaggcaccucgguccgCGCGGGCaGUa -3'
miRNA:   3'- -GCGGCG-GcGGCGG-GCG---------------GCGCCCG-CGa -5'
8999 5' -70.9 NC_002512.2 + 82183 0.66 0.408606
Target:  5'- gGUCGagaGcCCGUCCGCCGuCGGGCcgGCg -3'
miRNA:   3'- gCGGCgg-C-GGCGGGCGGC-GCCCG--CGa -5'
8999 5' -70.9 NC_002512.2 + 5726 0.66 0.393535
Target:  5'- cCGCgCGCCcCCGcCCCGCCucacGCGuccgccucccGGCGCg -3'
miRNA:   3'- -GCG-GCGGcGGC-GGGCGG----CGC----------CCGCGa -5'
8999 5' -70.9 NC_002512.2 + 134653 0.66 0.39279
Target:  5'- aCGCCGUgGCCGagugcggggCCGacgcgauccgucaCCaGCGGGCGCUc -3'
miRNA:   3'- -GCGGCGgCGGCg--------GGC-------------GG-CGCCCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 76898 0.66 0.386136
Target:  5'- cCGCUcCCGCCGaCCCGaCCG-GGGacCGCUc -3'
miRNA:   3'- -GCGGcGGCGGC-GGGC-GGCgCCC--GCGA- -5'
8999 5' -70.9 NC_002512.2 + 130572 0.66 0.408606
Target:  5'- uCGUCGUagGCCGCCgCGa-GCGGGCGg- -3'
miRNA:   3'- -GCGGCGg-CGGCGG-GCggCGCCCGCga -5'
8999 5' -70.9 NC_002512.2 + 111069 0.66 0.393535
Target:  5'- uGCCGCaucaCCGuguaggucauguCCCGCaUGCGGGUGCg -3'
miRNA:   3'- gCGGCGgc--GGC------------GGGCG-GCGCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 75625 0.66 0.378829
Target:  5'- gCGCaCGCgGgCaCgCGCaCGCGGGCGCUc -3'
miRNA:   3'- -GCG-GCGgCgGcGgGCG-GCGCCCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 4167 0.66 0.401025
Target:  5'- aGUCGCCGCgGCU---CGCGGGCGaCa -3'
miRNA:   3'- gCGGCGGCGgCGGgcgGCGCCCGC-Ga -5'
8999 5' -70.9 NC_002512.2 + 1304 0.66 0.385401
Target:  5'- gCGCCuGCCGCCGacaCGaCCGCGGuaaggaaGCGUc -3'
miRNA:   3'- -GCGG-CGGCGGCgg-GC-GGCGCC-------CGCGa -5'
8999 5' -70.9 NC_002512.2 + 7706 0.66 0.378829
Target:  5'- aCGCCgGCCGCgGCCCGggaGUaGGCGUc -3'
miRNA:   3'- -GCGG-CGGCGgCGGGCgg-CGcCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 101955 0.66 0.408606
Target:  5'- aGCUGguggcCCGCgGgCCCGCCGgCGGGCu-- -3'
miRNA:   3'- gCGGC-----GGCGgC-GGGCGGC-GCCCGcga -5'
8999 5' -70.9 NC_002512.2 + 80044 0.66 0.401025
Target:  5'- uCGUCGUCGUC-CUCGUcgCGCGGGuCGCUc -3'
miRNA:   3'- -GCGGCGGCGGcGGGCG--GCGCCC-GCGA- -5'
8999 5' -70.9 NC_002512.2 + 117513 0.66 0.386136
Target:  5'- gGCCGCCaCCGCCaucguGCCcaagguguccggGCuGGCGCUc -3'
miRNA:   3'- gCGGCGGcGGCGGg----CGG------------CGcCCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 57739 0.66 0.378829
Target:  5'- aCGCaguagacCCGCUGCCCGUCGCGcuccucgucgacGGUGCc -3'
miRNA:   3'- -GCGgc-----GGCGGCGGGCGGCGC------------CCGCGa -5'
8999 5' -70.9 NC_002512.2 + 85638 0.66 0.393535
Target:  5'- cCGCUGCCGCCGCaCUuuCCaCGGGgGUUc -3'
miRNA:   3'- -GCGGCGGCGGCG-GGc-GGcGCCCgCGA- -5'
8999 5' -70.9 NC_002512.2 + 36981 0.66 0.378829
Target:  5'- gGCgGCU-CUGgaCCGCCGCGGaGCGCg -3'
miRNA:   3'- gCGgCGGcGGCg-GGCGGCGCC-CGCGa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.