miRNA display CGI


Results 61 - 80 of 520 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8999 5' -70.9 NC_002512.2 + 85638 0.66 0.393535
Target:  5'- cCGCUGCCGCCGCaCUuuCCaCGGGgGUUc -3'
miRNA:   3'- -GCGGCGGCGGCG-GGc-GGcGCCCgCGA- -5'
8999 5' -70.9 NC_002512.2 + 98020 0.66 0.408606
Target:  5'- gGCCGUC-CUGaUCCGCCGC-GGCGUc -3'
miRNA:   3'- gCGGCGGcGGC-GGGCGGCGcCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 207162 0.66 0.400272
Target:  5'- aGCCGcCCGCgGUagcuguugaugugCCGCCG-GGGCGaCg -3'
miRNA:   3'- gCGGC-GGCGgCG-------------GGCGGCgCCCGC-Ga -5'
8999 5' -70.9 NC_002512.2 + 97757 0.66 0.393535
Target:  5'- -uCCGCCGCaa-CCGgCGCuaccGGGCGCUg -3'
miRNA:   3'- gcGGCGGCGgcgGGCgGCG----CCCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 137876 0.66 0.393535
Target:  5'- aCGCCcgcgaguCCGCCGCCgGCgaCGCGGGagacccggaCGCg -3'
miRNA:   3'- -GCGGc------GGCGGCGGgCG--GCGCCC---------GCGa -5'
8999 5' -70.9 NC_002512.2 + 208654 0.66 0.408606
Target:  5'- cCGCCcCCGUC-UCCGCCcCGGGCGg- -3'
miRNA:   3'- -GCGGcGGCGGcGGGCGGcGCCCGCga -5'
8999 5' -70.9 NC_002512.2 + 133888 0.66 0.408606
Target:  5'- aGCgGCUcgGCCGgCgGUCcCGGGCGCUg -3'
miRNA:   3'- gCGgCGG--CGGCgGgCGGcGCCCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 219341 0.66 0.401025
Target:  5'- gGcCCGCCgGCUGCCCGgcguCCGCGaGGUccuGCg -3'
miRNA:   3'- gC-GGCGG-CGGCGGGC----GGCGC-CCG---CGa -5'
8999 5' -70.9 NC_002512.2 + 101212 0.66 0.401025
Target:  5'- aCGaCgGCC-CCGUCCGCCGgGuuccGGCGCc -3'
miRNA:   3'- -GC-GgCGGcGGCGGGCGGCgC----CCGCGa -5'
8999 5' -70.9 NC_002512.2 + 121963 0.66 0.408606
Target:  5'- aGCUGacCCGgguccCCGCCCGCCGgCGGGaCGa- -3'
miRNA:   3'- gCGGC--GGC-----GGCGGGCGGC-GCCC-GCga -5'
8999 5' -70.9 NC_002512.2 + 36981 0.66 0.378829
Target:  5'- gGCgGCU-CUGgaCCGCCGCGGaGCGCg -3'
miRNA:   3'- gCGgCGGcGGCg-GGCGGCGCC-CGCGa -5'
8999 5' -70.9 NC_002512.2 + 62963 0.66 0.36379
Target:  5'- uCGUCGCCGCaCGCCuucauggCGUCGCGGaccaGCUu -3'
miRNA:   3'- -GCGGCGGCG-GCGG-------GCGGCGCCcg--CGA- -5'
8999 5' -70.9 NC_002512.2 + 93782 0.66 0.364496
Target:  5'- -cCCGUCGCUGUggCCGCCGCcaGCGCg -3'
miRNA:   3'- gcGGCGGCGGCG--GGCGGCGccCGCGa -5'
8999 5' -70.9 NC_002512.2 + 206983 0.66 0.393535
Target:  5'- aGCCGCCcgggaUGCCCGuggcCCGCGGGgucaGCa -3'
miRNA:   3'- gCGGCGGcg---GCGGGC----GGCGCCCg---CGa -5'
8999 5' -70.9 NC_002512.2 + 130572 0.66 0.408606
Target:  5'- uCGUCGUagGCCGCCgCGa-GCGGGCGg- -3'
miRNA:   3'- -GCGGCGg-CGGCGG-GCggCGCCCGCga -5'
8999 5' -70.9 NC_002512.2 + 191669 0.66 0.378829
Target:  5'- gGCCGUCuCCGCUauCGUCGCGGGauuGCc -3'
miRNA:   3'- gCGGCGGcGGCGG--GCGGCGCCCg--CGa -5'
8999 5' -70.9 NC_002512.2 + 203357 0.66 0.386136
Target:  5'- gGCgaGCUGCCGaCCagGCCGCGGuuGCUc -3'
miRNA:   3'- gCGg-CGGCGGC-GGg-CGGCGCCcgCGA- -5'
8999 5' -70.9 NC_002512.2 + 199978 0.66 0.386136
Target:  5'- cCGCCGCgucCGCgCGCCCGgCG-GGGacgaGCg -3'
miRNA:   3'- -GCGGCG---GCG-GCGGGCgGCgCCCg---CGa -5'
8999 5' -70.9 NC_002512.2 + 220655 0.66 0.378829
Target:  5'- gCGCgagCGCCaCCugGCCCGCCGCGucGUGCUg -3'
miRNA:   3'- -GCG---GCGGcGG--CGGGCGGCGCc-CGCGA- -5'
8999 5' -70.9 NC_002512.2 + 27373 0.66 0.371615
Target:  5'- cCGCCGCCGCCuccGCcuCCGCCGCcGaacUGCUg -3'
miRNA:   3'- -GCGGCGGCGG---CG--GGCGGCGcCc--GCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.