Results 61 - 80 of 520 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8999 | 5' | -70.9 | NC_002512.2 | + | 27373 | 0.66 | 0.371615 |
Target: 5'- cCGCCGCCGCCuccGCcuCCGCCGCcGaacUGCUg -3' miRNA: 3'- -GCGGCGGCGG---CG--GGCGGCGcCc--GCGA- -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 27418 | 0.68 | 0.274936 |
Target: 5'- uCGCCGCCGUCGCCgagCGuCCGCGGa---- -3' miRNA: 3'- -GCGGCGGCGGCGG---GC-GGCGCCcgcga -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 28015 | 0.72 | 0.163367 |
Target: 5'- aGCCGCCGCCguccucggaccgcagGCCCcaggcgagcugccgGCCGCggaaggagcccccGGGCGCg -3' miRNA: 3'- gCGGCGGCGG---------------CGGG--------------CGGCG-------------CCCGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 28185 | 0.75 | 0.103424 |
Target: 5'- aCGCCGCCGCCGauCCCGCaccagaCGCGGcCGCc -3' miRNA: 3'- -GCGGCGGCGGC--GGGCG------GCGCCcGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 28236 | 0.7 | 0.212954 |
Target: 5'- cCGCgGCCgggGCCGUCgCGCCGCGaguacgacGGCGCc -3' miRNA: 3'- -GCGgCGG---CGGCGG-GCGGCGC--------CCGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 28538 | 0.7 | 0.20837 |
Target: 5'- gGuCCGCCGCCGCCCGauGuCGGccaCGCUg -3' miRNA: 3'- gC-GGCGGCGGCGGGCggC-GCCc--GCGA- -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 29897 | 0.72 | 0.167067 |
Target: 5'- gGCCGCuCGUC-CCCGCCG-GGcGCGCg -3' miRNA: 3'- gCGGCG-GCGGcGGGCGGCgCC-CGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 30428 | 0.69 | 0.237184 |
Target: 5'- gCGUCGUCGCgGCCCugaaCGCGGGC-CUg -3' miRNA: 3'- -GCGGCGGCGgCGGGcg--GCGCCCGcGA- -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 30527 | 0.73 | 0.133258 |
Target: 5'- aGCUGCUGgagccggugaucUCGUUCGCCGUGGGCGCg -3' miRNA: 3'- gCGGCGGC------------GGCGGGCGGCGCCCGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 31219 | 0.71 | 0.195129 |
Target: 5'- gGCCccCCGUCGCCaCGCUGCugcguuucgugaGGGCGCUg -3' miRNA: 3'- gCGGc-GGCGGCGG-GCGGCG------------CCCGCGA- -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 31649 | 0.7 | 0.212954 |
Target: 5'- gGCCGUC-CCGgaCGgCGCGGGCGCg -3' miRNA: 3'- gCGGCGGcGGCggGCgGCGCCCGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 31732 | 0.73 | 0.142679 |
Target: 5'- gGCCGgCGCCGaCCCGgcCCGCGcGGgGCUc -3' miRNA: 3'- gCGGCgGCGGC-GGGC--GGCGC-CCgCGA- -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 31882 | 0.68 | 0.304745 |
Target: 5'- uCGCCcccguCCGUCGCCCGCuCGCgaagacgagagGGGCGgUg -3' miRNA: 3'- -GCGGc----GGCGGCGGGCG-GCG-----------CCCGCgA- -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 32561 | 0.73 | 0.136333 |
Target: 5'- -uCCaGCCGCCGggCGCCGCGGGUGCc -3' miRNA: 3'- gcGG-CGGCGGCggGCGGCGCCCGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 33477 | 0.7 | 0.217624 |
Target: 5'- gGCCGCCGCCcCCCGCgucccCGCGccagacccgcGGCGUc -3' miRNA: 3'- gCGGCGGCGGcGGGCG-----GCGC----------CCGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 34593 | 0.66 | 0.378829 |
Target: 5'- gCGCCcuucGgCGCCgGCCC-CCGCGGGgaaCGCg -3' miRNA: 3'- -GCGG----CgGCGG-CGGGcGGCGCCC---GCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 34868 | 0.72 | 0.152705 |
Target: 5'- uCGUCGCCGUCGUcgCCGCCGCcGGGacCGCc -3' miRNA: 3'- -GCGGCGGCGGCG--GGCGGCG-CCC--GCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 36446 | 0.68 | 0.286571 |
Target: 5'- -cCCGCCaCCGgCgGCCGCGGucGCGCUc -3' miRNA: 3'- gcGGCGGcGGCgGgCGGCGCC--CGCGA- -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 36981 | 0.66 | 0.378829 |
Target: 5'- gGCgGCU-CUGgaCCGCCGCGGaGCGCg -3' miRNA: 3'- gCGgCGGcGGCg-GGCGGCGCC-CGCGa -5' |
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8999 | 5' | -70.9 | NC_002512.2 | + | 37276 | 0.93 | 0.004062 |
Target: 5'- gGCCGCCGUCGCCCGCCGCGGcGCGCc -3' miRNA: 3'- gCGGCGGCGGCGGGCGGCGCC-CGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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