miRNA display CGI


Results 61 - 80 of 520 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8999 5' -70.9 NC_002512.2 + 27373 0.66 0.371615
Target:  5'- cCGCCGCCGCCuccGCcuCCGCCGCcGaacUGCUg -3'
miRNA:   3'- -GCGGCGGCGG---CG--GGCGGCGcCc--GCGA- -5'
8999 5' -70.9 NC_002512.2 + 27418 0.68 0.274936
Target:  5'- uCGCCGCCGUCGCCgagCGuCCGCGGa---- -3'
miRNA:   3'- -GCGGCGGCGGCGG---GC-GGCGCCcgcga -5'
8999 5' -70.9 NC_002512.2 + 28015 0.72 0.163367
Target:  5'- aGCCGCCGCCguccucggaccgcagGCCCcaggcgagcugccgGCCGCggaaggagcccccGGGCGCg -3'
miRNA:   3'- gCGGCGGCGG---------------CGGG--------------CGGCG-------------CCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 28185 0.75 0.103424
Target:  5'- aCGCCGCCGCCGauCCCGCaccagaCGCGGcCGCc -3'
miRNA:   3'- -GCGGCGGCGGC--GGGCG------GCGCCcGCGa -5'
8999 5' -70.9 NC_002512.2 + 28236 0.7 0.212954
Target:  5'- cCGCgGCCgggGCCGUCgCGCCGCGaguacgacGGCGCc -3'
miRNA:   3'- -GCGgCGG---CGGCGG-GCGGCGC--------CCGCGa -5'
8999 5' -70.9 NC_002512.2 + 28538 0.7 0.20837
Target:  5'- gGuCCGCCGCCGCCCGauGuCGGccaCGCUg -3'
miRNA:   3'- gC-GGCGGCGGCGGGCggC-GCCc--GCGA- -5'
8999 5' -70.9 NC_002512.2 + 29897 0.72 0.167067
Target:  5'- gGCCGCuCGUC-CCCGCCG-GGcGCGCg -3'
miRNA:   3'- gCGGCG-GCGGcGGGCGGCgCC-CGCGa -5'
8999 5' -70.9 NC_002512.2 + 30428 0.69 0.237184
Target:  5'- gCGUCGUCGCgGCCCugaaCGCGGGC-CUg -3'
miRNA:   3'- -GCGGCGGCGgCGGGcg--GCGCCCGcGA- -5'
8999 5' -70.9 NC_002512.2 + 30527 0.73 0.133258
Target:  5'- aGCUGCUGgagccggugaucUCGUUCGCCGUGGGCGCg -3'
miRNA:   3'- gCGGCGGC------------GGCGGGCGGCGCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 31219 0.71 0.195129
Target:  5'- gGCCccCCGUCGCCaCGCUGCugcguuucgugaGGGCGCUg -3'
miRNA:   3'- gCGGc-GGCGGCGG-GCGGCG------------CCCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 31649 0.7 0.212954
Target:  5'- gGCCGUC-CCGgaCGgCGCGGGCGCg -3'
miRNA:   3'- gCGGCGGcGGCggGCgGCGCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 31732 0.73 0.142679
Target:  5'- gGCCGgCGCCGaCCCGgcCCGCGcGGgGCUc -3'
miRNA:   3'- gCGGCgGCGGC-GGGC--GGCGC-CCgCGA- -5'
8999 5' -70.9 NC_002512.2 + 31882 0.68 0.304745
Target:  5'- uCGCCcccguCCGUCGCCCGCuCGCgaagacgagagGGGCGgUg -3'
miRNA:   3'- -GCGGc----GGCGGCGGGCG-GCG-----------CCCGCgA- -5'
8999 5' -70.9 NC_002512.2 + 32561 0.73 0.136333
Target:  5'- -uCCaGCCGCCGggCGCCGCGGGUGCc -3'
miRNA:   3'- gcGG-CGGCGGCggGCGGCGCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 33477 0.7 0.217624
Target:  5'- gGCCGCCGCCcCCCGCgucccCGCGccagacccgcGGCGUc -3'
miRNA:   3'- gCGGCGGCGGcGGGCG-----GCGC----------CCGCGa -5'
8999 5' -70.9 NC_002512.2 + 34593 0.66 0.378829
Target:  5'- gCGCCcuucGgCGCCgGCCC-CCGCGGGgaaCGCg -3'
miRNA:   3'- -GCGG----CgGCGG-CGGGcGGCGCCC---GCGa -5'
8999 5' -70.9 NC_002512.2 + 34868 0.72 0.152705
Target:  5'- uCGUCGCCGUCGUcgCCGCCGCcGGGacCGCc -3'
miRNA:   3'- -GCGGCGGCGGCG--GGCGGCG-CCC--GCGa -5'
8999 5' -70.9 NC_002512.2 + 36446 0.68 0.286571
Target:  5'- -cCCGCCaCCGgCgGCCGCGGucGCGCUc -3'
miRNA:   3'- gcGGCGGcGGCgGgCGGCGCC--CGCGA- -5'
8999 5' -70.9 NC_002512.2 + 36981 0.66 0.378829
Target:  5'- gGCgGCU-CUGgaCCGCCGCGGaGCGCg -3'
miRNA:   3'- gCGgCGGcGGCg-GGCGGCGCC-CGCGa -5'
8999 5' -70.9 NC_002512.2 + 37276 0.93 0.004062
Target:  5'- gGCCGCCGUCGCCCGCCGCGGcGCGCc -3'
miRNA:   3'- gCGGCGGCGGCGGGCGGCGCC-CGCGa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.