miRNA display CGI


Results 41 - 60 of 520 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8999 5' -70.9 NC_002512.2 + 97757 0.66 0.393535
Target:  5'- -uCCGCCGCaa-CCGgCGCuaccGGGCGCUg -3'
miRNA:   3'- gcGGCGGCGgcgGGCgGCG----CCCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 137876 0.66 0.393535
Target:  5'- aCGCCcgcgaguCCGCCGCCgGCgaCGCGGGagacccggaCGCg -3'
miRNA:   3'- -GCGGc------GGCGGCGGgCG--GCGCCC---------GCGa -5'
8999 5' -70.9 NC_002512.2 + 94686 0.66 0.393535
Target:  5'- gGCgCGCaGCUGCCCucgugcgacaGCuCGCGGuGCGCg -3'
miRNA:   3'- gCG-GCGgCGGCGGG----------CG-GCGCC-CGCGa -5'
8999 5' -70.9 NC_002512.2 + 134653 0.66 0.39279
Target:  5'- aCGCCGUgGCCGagugcggggCCGacgcgauccgucaCCaGCGGGCGCUc -3'
miRNA:   3'- -GCGGCGgCGGCg--------GGC-------------GG-CGCCCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 38397 0.66 0.386136
Target:  5'- aGCgCGCCgGUCGCCgCGCUGUccGGCGCc -3'
miRNA:   3'- gCG-GCGG-CGGCGG-GCGGCGc-CCGCGa -5'
8999 5' -70.9 NC_002512.2 + 117513 0.66 0.386136
Target:  5'- gGCCGCCaCCGCCaucguGCCcaagguguccggGCuGGCGCUc -3'
miRNA:   3'- gCGGCGGcGGCGGg----CGG------------CGcCCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 229460 0.66 0.386136
Target:  5'- gGCUuuGCgG-CGUCgGUCGCGGGCGCg -3'
miRNA:   3'- gCGG--CGgCgGCGGgCGGCGCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 4805 0.66 0.386136
Target:  5'- gGuuGCUGCgGCagCUGCUGCGGGaCGUg -3'
miRNA:   3'- gCggCGGCGgCG--GGCGGCGCCC-GCGa -5'
8999 5' -70.9 NC_002512.2 + 56 0.66 0.386136
Target:  5'- gGCUuuGCgG-CGUCgGUCGCGGGCGCg -3'
miRNA:   3'- gCGG--CGgCgGCGGgCGGCGCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 76848 0.66 0.386136
Target:  5'- cCGCUcCCGCCGaCCCGaCCG-GGGacCGCUc -3'
miRNA:   3'- -GCGGcGGCGGC-GGGC-GGCgCCC--GCGA- -5'
8999 5' -70.9 NC_002512.2 + 199978 0.66 0.386136
Target:  5'- cCGCCGCgucCGCgCGCCCGgCG-GGGacgaGCg -3'
miRNA:   3'- -GCGGCG---GCG-GCGGGCgGCgCCCg---CGa -5'
8999 5' -70.9 NC_002512.2 + 207064 0.66 0.386136
Target:  5'- uCGCCaucacgGUCGUCGagaaguggauCCCGCCcuugugguaGCGGGCGCg -3'
miRNA:   3'- -GCGG------CGGCGGC----------GGGCGG---------CGCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 76898 0.66 0.386136
Target:  5'- cCGCUcCCGCCGaCCCGaCCG-GGGacCGCUc -3'
miRNA:   3'- -GCGGcGGCGGC-GGGC-GGCgCCC--GCGA- -5'
8999 5' -70.9 NC_002512.2 + 200714 0.66 0.386136
Target:  5'- gCGUCggGCUGCCGCCCGgcgguCCGaacgggucguacCGGGCGUg -3'
miRNA:   3'- -GCGG--CGGCGGCGGGC-----GGC------------GCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 203357 0.66 0.386136
Target:  5'- gGCgaGCUGCCGaCCagGCCGCGGuuGCUc -3'
miRNA:   3'- gCGg-CGGCGGC-GGg-CGGCGCCcgCGA- -5'
8999 5' -70.9 NC_002512.2 + 1304 0.66 0.385401
Target:  5'- gCGCCuGCCGCCGacaCGaCCGCGGuaaggaaGCGUc -3'
miRNA:   3'- -GCGG-CGGCGGCgg-GC-GGCGCC-------CGCGa -5'
8999 5' -70.9 NC_002512.2 + 34593 0.66 0.378829
Target:  5'- gCGCCcuucGgCGCCgGCCC-CCGCGGGgaaCGCg -3'
miRNA:   3'- -GCGG----CgGCGG-CGGGcGGCGCCC---GCGa -5'
8999 5' -70.9 NC_002512.2 + 75625 0.66 0.378829
Target:  5'- gCGCaCGCgGgCaCgCGCaCGCGGGCGCUc -3'
miRNA:   3'- -GCG-GCGgCgGcGgGCG-GCGCCCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 129887 0.66 0.378829
Target:  5'- uCGCCGUCGCC-CUCGCCGaCGaucCGCUc -3'
miRNA:   3'- -GCGGCGGCGGcGGGCGGC-GCcc-GCGA- -5'
8999 5' -70.9 NC_002512.2 + 191669 0.66 0.378829
Target:  5'- gGCCGUCuCCGCUauCGUCGCGGGauuGCc -3'
miRNA:   3'- gCGGCGGcGGCGG--GCGGCGCCCg--CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.