miRNA display CGI


Results 61 - 80 of 520 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8999 5' -70.9 NC_002512.2 + 7706 0.66 0.378829
Target:  5'- aCGCCgGCCGCgGCCCGggaGUaGGCGUc -3'
miRNA:   3'- -GCGG-CGGCGgCGGGCgg-CGcCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 99894 0.66 0.378829
Target:  5'- aGgaGgCGCgGCCCGUCGaGGGCGCc -3'
miRNA:   3'- gCggCgGCGgCGGGCGGCgCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 177023 0.66 0.378829
Target:  5'- gGCCGCCugcgcgucCCGCCaguugaGCCGUaGGUGCUu -3'
miRNA:   3'- gCGGCGGc-------GGCGGg-----CGGCGcCCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 219038 0.66 0.378829
Target:  5'- gGUCuaCGUCGUCgGCCGCGG-CGCg -3'
miRNA:   3'- gCGGcgGCGGCGGgCGGCGCCcGCGa -5'
8999 5' -70.9 NC_002512.2 + 3138 0.66 0.378829
Target:  5'- gGCCGCaCGCC-UCCGCCGUcuccGGGacaGCc -3'
miRNA:   3'- gCGGCG-GCGGcGGGCGGCG----CCCg--CGa -5'
8999 5' -70.9 NC_002512.2 + 36981 0.66 0.378829
Target:  5'- gGCgGCU-CUGgaCCGCCGCGGaGCGCg -3'
miRNA:   3'- gCGgCGGcGGCg-GGCGGCGCC-CGCGa -5'
8999 5' -70.9 NC_002512.2 + 126833 0.66 0.378829
Target:  5'- cCGUCGUCG-CGCUCGUCGCGGuCGUc -3'
miRNA:   3'- -GCGGCGGCgGCGGGCGGCGCCcGCGa -5'
8999 5' -70.9 NC_002512.2 + 109266 0.66 0.378829
Target:  5'- cCGUC-CCGCCGCCUcCCGCucucaccGGCGCc -3'
miRNA:   3'- -GCGGcGGCGGCGGGcGGCGc------CCGCGa -5'
8999 5' -70.9 NC_002512.2 + 220655 0.66 0.378829
Target:  5'- gCGCgagCGCCaCCugGCCCGCCGCGucGUGCUg -3'
miRNA:   3'- -GCG---GCGGcGG--CGGGCGGCGCc-CGCGA- -5'
8999 5' -70.9 NC_002512.2 + 191669 0.66 0.378829
Target:  5'- gGCCGUCuCCGCUauCGUCGCGGGauuGCc -3'
miRNA:   3'- gCGGCGGcGGCGG--GCGGCGCCCg--CGa -5'
8999 5' -70.9 NC_002512.2 + 124834 0.66 0.378829
Target:  5'- aCGCCGCCGUCGCCga--GCGaGGCccGCg -3'
miRNA:   3'- -GCGGCGGCGGCGGgcggCGC-CCG--CGa -5'
8999 5' -70.9 NC_002512.2 + 20111 0.66 0.378103
Target:  5'- aGCCGCCGg-GCuuGCCgaaagacGCGGaGCGCg -3'
miRNA:   3'- gCGGCGGCggCGggCGG-------CGCC-CGCGa -5'
8999 5' -70.9 NC_002512.2 + 222300 0.66 0.374489
Target:  5'- aCGaCCGCUGCCGCCgGaggcgguaccggaggCUGCGGcgGCGCc -3'
miRNA:   3'- -GC-GGCGGCGGCGGgC---------------GGCGCC--CGCGa -5'
8999 5' -70.9 NC_002512.2 + 143221 0.66 0.371615
Target:  5'- uCGCgCGCCGuCCGCUCGgaCGCGGccacCGCg -3'
miRNA:   3'- -GCG-GCGGC-GGCGGGCg-GCGCCc---GCGa -5'
8999 5' -70.9 NC_002512.2 + 27373 0.66 0.371615
Target:  5'- cCGCCGCCGCCuccGCcuCCGCCGCcGaacUGCUg -3'
miRNA:   3'- -GCGGCGGCGG---CG--GGCGGCGcCc--GCGA- -5'
8999 5' -70.9 NC_002512.2 + 224676 0.66 0.371615
Target:  5'- cCGCCGCCGUCGgCUGgcCCGCGGuccUGCc -3'
miRNA:   3'- -GCGGCGGCGGCgGGC--GGCGCCc--GCGa -5'
8999 5' -70.9 NC_002512.2 + 125545 0.66 0.371615
Target:  5'- aGCgaGCCGCCGCCCGaCCGaCGGaaGg- -3'
miRNA:   3'- gCGg-CGGCGGCGGGC-GGC-GCCcgCga -5'
8999 5' -70.9 NC_002512.2 + 149891 0.66 0.371615
Target:  5'- gGCUGCCGCUGCCUGgaccuCCGC--GCGCc -3'
miRNA:   3'- gCGGCGGCGGCGGGC-----GGCGccCGCGa -5'
8999 5' -70.9 NC_002512.2 + 220439 0.66 0.371615
Target:  5'- aGCCGCCGgaGCUCuaCGUGGGCu-- -3'
miRNA:   3'- gCGGCGGCggCGGGcgGCGCCCGcga -5'
8999 5' -70.9 NC_002512.2 + 126529 0.66 0.370899
Target:  5'- gGCgGCCugaccucgaccguGCCGUCCGCCcCGGGCu-- -3'
miRNA:   3'- gCGgCGG-------------CGGCGGGCGGcGCCCGcga -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.