miRNA display CGI


Results 21 - 40 of 520 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8999 5' -70.9 NC_002512.2 + 219341 0.66 0.401025
Target:  5'- gGcCCGCCgGCUGCCCGgcguCCGCGaGGUccuGCg -3'
miRNA:   3'- gC-GGCGG-CGGCGGGC----GGCGC-CCG---CGa -5'
8999 5' -70.9 NC_002512.2 + 128766 0.66 0.401025
Target:  5'- gCGCUGCgcgagCGCaCGCCgCGCCGC--GCGCUg -3'
miRNA:   3'- -GCGGCG-----GCG-GCGG-GCGGCGccCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 101212 0.66 0.401025
Target:  5'- aCGaCgGCC-CCGUCCGCCGgGuuccGGCGCc -3'
miRNA:   3'- -GC-GgCGGcGGCGGGCGGCgC----CCGCGa -5'
8999 5' -70.9 NC_002512.2 + 140302 0.66 0.401025
Target:  5'- cCGCgacaucCCGCCaCCCGCCGCaGGCGa- -3'
miRNA:   3'- -GCGgc----GGCGGcGGGCGGCGcCCGCga -5'
8999 5' -70.9 NC_002512.2 + 80044 0.66 0.401025
Target:  5'- uCGUCGUCGUC-CUCGUcgCGCGGGuCGCUc -3'
miRNA:   3'- -GCGGCGGCGGcGGGCG--GCGCCC-GCGA- -5'
8999 5' -70.9 NC_002512.2 + 116786 0.66 0.401025
Target:  5'- aCGUcagCGUCGCCGCCCGUCaguaCGuGCGCa -3'
miRNA:   3'- -GCG---GCGGCGGCGGGCGGc---GCcCGCGa -5'
8999 5' -70.9 NC_002512.2 + 4167 0.66 0.401025
Target:  5'- aGUCGCCGCgGCU---CGCGGGCGaCa -3'
miRNA:   3'- gCGGCGGCGgCGGgcgGCGCCCGC-Ga -5'
8999 5' -70.9 NC_002512.2 + 75147 0.66 0.401025
Target:  5'- aCGCCGUCGgaCG-CgGCCGCGGaCGCa -3'
miRNA:   3'- -GCGGCGGCg-GCgGgCGGCGCCcGCGa -5'
8999 5' -70.9 NC_002512.2 + 8130 0.66 0.401025
Target:  5'- gGCCGCCcaGCUGCCguucgacggcgCGuCCGCcaGGCGCUc -3'
miRNA:   3'- gCGGCGG--CGGCGG-----------GC-GGCGc-CCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 207162 0.66 0.400272
Target:  5'- aGCCGcCCGCgGUagcuguugaugugCCGCCG-GGGCGaCg -3'
miRNA:   3'- gCGGC-GGCGgCG-------------GGCGGCgCCCGC-Ga -5'
8999 5' -70.9 NC_002512.2 + 110933 0.66 0.398769
Target:  5'- -cCCGCCGCCGCCCcacgcuccccucgaGCuCGCGGuCGa- -3'
miRNA:   3'- gcGGCGGCGGCGGG--------------CG-GCGCCcGCga -5'
8999 5' -70.9 NC_002512.2 + 196243 0.66 0.393535
Target:  5'- uGuCCGCCG-CGCCCGCgCGCGccucucgccucGGCGa- -3'
miRNA:   3'- gC-GGCGGCgGCGGGCG-GCGC-----------CCGCga -5'
8999 5' -70.9 NC_002512.2 + 7346 0.66 0.393535
Target:  5'- uCGCCGuaGCCccgGCCCaccgcgacggcgGCCGCGGcGgGCg -3'
miRNA:   3'- -GCGGCggCGG---CGGG------------CGGCGCC-CgCGa -5'
8999 5' -70.9 NC_002512.2 + 94686 0.66 0.393535
Target:  5'- gGCgCGCaGCUGCCCucgugcgacaGCuCGCGGuGCGCg -3'
miRNA:   3'- gCG-GCGgCGGCGGG----------CG-GCGCC-CGCGa -5'
8999 5' -70.9 NC_002512.2 + 85638 0.66 0.393535
Target:  5'- cCGCUGCCGCCGCaCUuuCCaCGGGgGUUc -3'
miRNA:   3'- -GCGGCGGCGGCG-GGc-GGcGCCCgCGA- -5'
8999 5' -70.9 NC_002512.2 + 97757 0.66 0.393535
Target:  5'- -uCCGCCGCaa-CCGgCGCuaccGGGCGCUg -3'
miRNA:   3'- gcGGCGGCGgcgGGCgGCG----CCCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 5726 0.66 0.393535
Target:  5'- cCGCgCGCCcCCGcCCCGCCucacGCGuccgccucccGGCGCg -3'
miRNA:   3'- -GCG-GCGGcGGC-GGGCGG----CGC----------CCGCGa -5'
8999 5' -70.9 NC_002512.2 + 131719 0.66 0.393535
Target:  5'- uCGCCGCgcccguccagaCGCgGCgaCCGCCgggGCGGGCGg- -3'
miRNA:   3'- -GCGGCG-----------GCGgCG--GGCGG---CGCCCGCga -5'
8999 5' -70.9 NC_002512.2 + 111069 0.66 0.393535
Target:  5'- uGCCGCaucaCCGuguaggucauguCCCGCaUGCGGGUGCg -3'
miRNA:   3'- gCGGCGgc--GGC------------GGGCG-GCGCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 137876 0.66 0.393535
Target:  5'- aCGCCcgcgaguCCGCCGCCgGCgaCGCGGGagacccggaCGCg -3'
miRNA:   3'- -GCGGc------GGCGGCGGgCG--GCGCCC---------GCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.