miRNA display CGI


Results 1 - 20 of 520 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8999 5' -70.9 NC_002512.2 + 212998 0.66 0.408606
Target:  5'- uCGCCGCgGCCGUCgGgCC-CGGG-GCc -3'
miRNA:   3'- -GCGGCGgCGGCGGgC-GGcGCCCgCGa -5'
8999 5' -70.9 NC_002512.2 + 117552 0.66 0.408606
Target:  5'- aCGCUGCUGUacagCGCCaaggCGUCGauGGCGCUg -3'
miRNA:   3'- -GCGGCGGCG----GCGG----GCGGCgcCCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 77365 0.66 0.408606
Target:  5'- aCGCCGUCGCCGagacCCCGaCCcCGGaaCGCUc -3'
miRNA:   3'- -GCGGCGGCGGC----GGGC-GGcGCCc-GCGA- -5'
8999 5' -70.9 NC_002512.2 + 123216 0.66 0.408606
Target:  5'- cCGaggaCGUCGCCGCCCagUGCGGGCu-- -3'
miRNA:   3'- -GCg---GCGGCGGCGGGcgGCGCCCGcga -5'
8999 5' -70.9 NC_002512.2 + 208654 0.66 0.408606
Target:  5'- cCGCCcCCGUC-UCCGCCcCGGGCGg- -3'
miRNA:   3'- -GCGGcGGCGGcGGGCGGcGCCCGCga -5'
8999 5' -70.9 NC_002512.2 + 145007 0.66 0.408606
Target:  5'- gGUCGagCGCuuCGCCCGCUacgccCGGGCGCg -3'
miRNA:   3'- gCGGCg-GCG--GCGGGCGGc----GCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 133888 0.66 0.408606
Target:  5'- aGCgGCUcgGCCGgCgGUCcCGGGCGCUg -3'
miRNA:   3'- gCGgCGG--CGGCgGgCGGcGCCCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 40362 0.66 0.408606
Target:  5'- aCGCCGaCCGCgGCgaGCC-CGGGCcCg -3'
miRNA:   3'- -GCGGC-GGCGgCGggCGGcGCCCGcGa -5'
8999 5' -70.9 NC_002512.2 + 101955 0.66 0.408606
Target:  5'- aGCUGguggcCCGCgGgCCCGCCGgCGGGCu-- -3'
miRNA:   3'- gCGGC-----GGCGgC-GGGCGGC-GCCCGcga -5'
8999 5' -70.9 NC_002512.2 + 130572 0.66 0.408606
Target:  5'- uCGUCGUagGCCGCCgCGa-GCGGGCGg- -3'
miRNA:   3'- -GCGGCGg-CGGCGG-GCggCGCCCGCga -5'
8999 5' -70.9 NC_002512.2 + 82183 0.66 0.408606
Target:  5'- gGUCGagaGcCCGUCCGCCGuCGGGCcgGCg -3'
miRNA:   3'- gCGGCgg-C-GGCGGGCGGC-GCCCG--CGa -5'
8999 5' -70.9 NC_002512.2 + 121963 0.66 0.408606
Target:  5'- aGCUGacCCGgguccCCGCCCGCCGgCGGGaCGa- -3'
miRNA:   3'- gCGGC--GGC-----GGCGGGCGGC-GCCC-GCga -5'
8999 5' -70.9 NC_002512.2 + 98020 0.66 0.408606
Target:  5'- gGCCGUC-CUGaUCCGCCGC-GGCGUc -3'
miRNA:   3'- gCGGCGGcGGC-GGGCGGCGcCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 38857 0.66 0.404047
Target:  5'- gCGCCGCgCcCCGCCuCGCaggcaccucgguccgCGCGGGCaGUa -3'
miRNA:   3'- -GCGGCG-GcGGCGG-GCG---------------GCGCCCG-CGa -5'
8999 5' -70.9 NC_002512.2 + 53414 0.66 0.40329
Target:  5'- gGCCGCCauccaggagaagagaGCCGCggaacccgacaccCCGaCCGCGG-CGCa -3'
miRNA:   3'- gCGGCGG---------------CGGCG-------------GGC-GGCGCCcGCGa -5'
8999 5' -70.9 NC_002512.2 + 4167 0.66 0.401025
Target:  5'- aGUCGCCGCgGCU---CGCGGGCGaCa -3'
miRNA:   3'- gCGGCGGCGgCGGgcgGCGCCCGC-Ga -5'
8999 5' -70.9 NC_002512.2 + 8130 0.66 0.401025
Target:  5'- gGCCGCCcaGCUGCCguucgacggcgCGuCCGCcaGGCGCUc -3'
miRNA:   3'- gCGGCGG--CGGCGG-----------GC-GGCGc-CCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 116786 0.66 0.401025
Target:  5'- aCGUcagCGUCGCCGCCCGUCaguaCGuGCGCa -3'
miRNA:   3'- -GCG---GCGGCGGCGGGCGGc---GCcCGCGa -5'
8999 5' -70.9 NC_002512.2 + 80044 0.66 0.401025
Target:  5'- uCGUCGUCGUC-CUCGUcgCGCGGGuCGCUc -3'
miRNA:   3'- -GCGGCGGCGGcGGGCG--GCGCCC-GCGA- -5'
8999 5' -70.9 NC_002512.2 + 75147 0.66 0.401025
Target:  5'- aCGCCGUCGgaCG-CgGCCGCGGaCGCa -3'
miRNA:   3'- -GCGGCGGCg-GCgGgCGGCGCCcGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.