miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9001 5' -59.8 NC_002512.2 + 183499 0.7 0.610375
Target:  5'- cGCCUacGGCCgCGAgGGGGAGGCCg- -3'
miRNA:   3'- aUGGAc-CUGGaGCUgCCCCUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 98325 0.7 0.633749
Target:  5'- gGCUcgGGGCCgggGACGGGGAGgggggcggccccuccGCCUCg -3'
miRNA:   3'- aUGGa-CCUGGag-CUGCCCCUC---------------UGGAG- -5'
9001 5' -59.8 NC_002512.2 + 128201 0.69 0.649333
Target:  5'- cGCCggcgGGACCgggGACGGGGAcGACUg- -3'
miRNA:   3'- aUGGa---CCUGGag-CUGCCCCU-CUGGag -5'
9001 5' -59.8 NC_002512.2 + 100486 0.69 0.659059
Target:  5'- gGCCcGGACCU---UGGGGAGGCCg- -3'
miRNA:   3'- aUGGaCCUGGAgcuGCCCCUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 164439 0.69 0.667796
Target:  5'- cGCCgGGAagccgcucggcgcCCUCGGCGGGGGcgacGACCg- -3'
miRNA:   3'- aUGGaCCU-------------GGAGCUGCCCCU----CUGGag -5'
9001 5' -59.8 NC_002512.2 + 9688 0.69 0.668765
Target:  5'- cGCCgucGGGCCcCGGCGGGGguucgcGGaACCUCc -3'
miRNA:   3'- aUGGa--CCUGGaGCUGCCCC------UC-UGGAG- -5'
9001 5' -59.8 NC_002512.2 + 113215 0.69 0.668765
Target:  5'- aGCCgGGuCCUCGccCGGGGAGACg-- -3'
miRNA:   3'- aUGGaCCuGGAGCu-GCCCCUCUGgag -5'
9001 5' -59.8 NC_002512.2 + 90484 0.69 0.668765
Target:  5'- cACCgGGGcguCCUCGACGGGaucGGGGCCg- -3'
miRNA:   3'- aUGGaCCU---GGAGCUGCCC---CUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 108530 0.69 0.68809
Target:  5'- gGCCggGGACC-CGACGGcGGAGaagguccgccggGCCUUc -3'
miRNA:   3'- aUGGa-CCUGGaGCUGCC-CCUC------------UGGAG- -5'
9001 5' -59.8 NC_002512.2 + 192317 0.68 0.707246
Target:  5'- -uCCUGGAUCggUGACGGGGcGGcuCCUCu -3'
miRNA:   3'- auGGACCUGGa-GCUGCCCCuCU--GGAG- -5'
9001 5' -59.8 NC_002512.2 + 141542 0.68 0.716741
Target:  5'- cACCauggUGGACU---ACGGGGuGACCUCg -3'
miRNA:   3'- aUGG----ACCUGGagcUGCCCCuCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 149985 0.68 0.726171
Target:  5'- -cCCUGGACCUgaCGACGcGGGAacccacgccggGGCuCUCu -3'
miRNA:   3'- auGGACCUGGA--GCUGC-CCCU-----------CUG-GAG- -5'
9001 5' -59.8 NC_002512.2 + 128380 0.68 0.735528
Target:  5'- -cCCUGuGCUaCGACGGGGAGAgcgaCUCg -3'
miRNA:   3'- auGGACcUGGaGCUGCCCCUCUg---GAG- -5'
9001 5' -59.8 NC_002512.2 + 133585 0.68 0.735528
Target:  5'- cGCCggGGACC-CGAgCGGGccGGCCUCc -3'
miRNA:   3'- aUGGa-CCUGGaGCU-GCCCcuCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 135148 0.68 0.744803
Target:  5'- cGCCUGcGACCg-GGCGGGGuucGCCUg -3'
miRNA:   3'- aUGGAC-CUGGagCUGCCCCuc-UGGAg -5'
9001 5' -59.8 NC_002512.2 + 226892 0.68 0.753988
Target:  5'- gGCCcgGGACCgggCcACGcGGGAGGCCa- -3'
miRNA:   3'- aUGGa-CCUGGa--GcUGC-CCCUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 185521 0.68 0.753988
Target:  5'- gGCCUGccgcuCUUCGAgGGGGuGGCCUa -3'
miRNA:   3'- aUGGACcu---GGAGCUgCCCCuCUGGAg -5'
9001 5' -59.8 NC_002512.2 + 72533 0.67 0.763076
Target:  5'- gGCCcGGACCUCGGCGGccAGGCg-- -3'
miRNA:   3'- aUGGaCCUGGAGCUGCCccUCUGgag -5'
9001 5' -59.8 NC_002512.2 + 80820 0.67 0.763076
Target:  5'- cGCCUcGGCgUCGGCGGaGGGGccccguaggcgaGCCUCg -3'
miRNA:   3'- aUGGAcCUGgAGCUGCC-CCUC------------UGGAG- -5'
9001 5' -59.8 NC_002512.2 + 31773 0.67 0.768479
Target:  5'- aACCUcaaggGGGCCaaacccuacucggCGACGGGGAGACg-- -3'
miRNA:   3'- aUGGA-----CCUGGa------------GCUGCCCCUCUGgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.