Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9005 | 3' | -59.4 | NC_002512.2 | + | 122175 | 0.66 | 0.874083 |
Target: 5'- --aCGG--UCUCgGAUCCCAacacGGCGGUg -3' miRNA: 3'- cgaGCCcuAGAGgCUAGGGU----CCGCCA- -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 207829 | 0.69 | 0.73419 |
Target: 5'- aCUCGGcGUCUcCCGAUCCC-GGCGc- -3' miRNA: 3'- cGAGCCcUAGA-GGCUAGGGuCCGCca -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 219837 | 0.69 | 0.706075 |
Target: 5'- cGgUCGGGGggUCCGG-CCCggGGGCGGa -3' miRNA: 3'- -CgAGCCCUagAGGCUaGGG--UCCGCCa -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 180031 | 1.09 | 0.002275 |
Target: 5'- cGCUCGGGAUCUCCGAUCCCAGGCGGUg -3' miRNA: 3'- -CGAGCCCUAGAGGCUAGGGUCCGCCA- -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 108445 | 0.66 | 0.867123 |
Target: 5'- gGC-CGGGGggUCCcucCCCGGGCGGc -3' miRNA: 3'- -CGaGCCCUagAGGcuaGGGUCCGCCa -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 27627 | 0.66 | 0.85925 |
Target: 5'- aCUUGGGAUCUCUucgaaaaGAUCCacgaaGCGGUa -3' miRNA: 3'- cGAGCCCUAGAGG-------CUAGGguc--CGCCA- -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 90500 | 0.66 | 0.852643 |
Target: 5'- --aCGGGAUCggggCCGAggCCGgcGGCGGa -3' miRNA: 3'- cgaGCCCUAGa---GGCUagGGU--CCGCCa -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 37625 | 0.66 | 0.852643 |
Target: 5'- uGCcgUGGGAUCUCCGAgaCCCGaacguaGCGGc -3' miRNA: 3'- -CGa-GCCCUAGAGGCUa-GGGUc-----CGCCa -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 225838 | 0.67 | 0.829597 |
Target: 5'- cGCggGGGAUCgagCCGcuccuGUCCCGGGUGu- -3' miRNA: 3'- -CGagCCCUAGa--GGC-----UAGGGUCCGCca -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 201747 | 0.69 | 0.743413 |
Target: 5'- gGCUgGGGcg--CCGAUCCCGGG-GGa -3' miRNA: 3'- -CGAgCCCuagaGGCUAGGGUCCgCCa -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 194633 | 0.67 | 0.819152 |
Target: 5'- cGCggGGGAccugcccguccucuUCUCCGAUC--GGGCGGUc -3' miRNA: 3'- -CGagCCCU--------------AGAGGCUAGggUCCGCCA- -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 107006 | 0.67 | 0.845132 |
Target: 5'- gGC-CGGGGUCggCCGAgagCCGGGCGc- -3' miRNA: 3'- -CGaGCCCUAGa-GGCUag-GGUCCGCca -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 159360 | 0.66 | 0.867828 |
Target: 5'- gGCgUCGGGGUCggggcgucccauucgCgGGUCCCgcggcgucgGGGCGGa -3' miRNA: 3'- -CG-AGCCCUAGa--------------GgCUAGGG---------UCCGCCa -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 204800 | 0.68 | 0.796655 |
Target: 5'- cGCcCGGGAggUCCGcGUCCCGGG-GGc -3' miRNA: 3'- -CGaGCCCUagAGGC-UAGGGUCCgCCa -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 96301 | 0.66 | 0.867123 |
Target: 5'- gGC-CGGcccgCUCgGGUCCCcGGCGGUc -3' miRNA: 3'- -CGaGCCcua-GAGgCUAGGGuCCGCCA- -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 126968 | 0.67 | 0.845132 |
Target: 5'- cGCUCccaguaGGGGUCcgcggUCCucUCCCAGcGCGGg -3' miRNA: 3'- -CGAG------CCCUAG-----AGGcuAGGGUC-CGCCa -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 116459 | 0.68 | 0.796655 |
Target: 5'- aGCUCGGGGacggggCggUGAUCCC-GGCGGc -3' miRNA: 3'- -CGAGCCCUa-----GagGCUAGGGuCCGCCa -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 127073 | 0.69 | 0.706075 |
Target: 5'- -aUCGGGuAUC-CCGuUCCCGGaGCGGa -3' miRNA: 3'- cgAGCCC-UAGaGGCuAGGGUC-CGCCa -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 206129 | 0.66 | 0.867123 |
Target: 5'- gGCgcagCGGGGcgUCCGGUCgCCAGaCGGUc -3' miRNA: 3'- -CGa---GCCCUagAGGCUAG-GGUCcGCCA- -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 224379 | 0.66 | 0.852643 |
Target: 5'- gGUcCGGGAcCUCgCGAcCCCGGcGCGGa -3' miRNA: 3'- -CGaGCCCUaGAG-GCUaGGGUC-CGCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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