miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9005 3' -59.4 NC_002512.2 + 194633 0.67 0.819152
Target:  5'- cGCggGGGAccugcccguccucuUCUCCGAUC--GGGCGGUc -3'
miRNA:   3'- -CGagCCCU--------------AGAGGCUAGggUCCGCCA- -5'
9005 3' -59.4 NC_002512.2 + 24303 0.67 0.81342
Target:  5'- aGCggCGGGGcgaaCUgCGGUCCCccGGCGGUc -3'
miRNA:   3'- -CGa-GCCCUa---GAgGCUAGGGu-CCGCCA- -5'
9005 3' -59.4 NC_002512.2 + 82403 0.67 0.805108
Target:  5'- cGCgcgCGGGGgagCCGGuggUCCCGcGGCGGa -3'
miRNA:   3'- -CGa--GCCCUagaGGCU---AGGGU-CCGCCa -5'
9005 3' -59.4 NC_002512.2 + 84164 0.67 0.802587
Target:  5'- cGCgCGGGAggUC-CCGGUCcagguucggcgggaCCAGGCGGc -3'
miRNA:   3'- -CGaGCCCU--AGaGGCUAG--------------GGUCCGCCa -5'
9005 3' -59.4 NC_002512.2 + 116459 0.68 0.796655
Target:  5'- aGCUCGGGGacggggCggUGAUCCC-GGCGGc -3'
miRNA:   3'- -CGAGCCCUa-----GagGCUAGGGuCCGCCa -5'
9005 3' -59.4 NC_002512.2 + 204800 0.68 0.796655
Target:  5'- cGCcCGGGAggUCCGcGUCCCGGG-GGc -3'
miRNA:   3'- -CGaGCCCUagAGGC-UAGGGUCCgCCa -5'
9005 3' -59.4 NC_002512.2 + 90054 0.68 0.796655
Target:  5'- cGCUCGGGGUCgaccaugaCGuUCgCCggGGGCGGg -3'
miRNA:   3'- -CGAGCCCUAGag------GCuAG-GG--UCCGCCa -5'
9005 3' -59.4 NC_002512.2 + 101849 0.68 0.796655
Target:  5'- -gUCGGGGccgugcagcUCUUCGAcgCCgGGGCGGg -3'
miRNA:   3'- cgAGCCCU---------AGAGGCUa-GGgUCCGCCa -5'
9005 3' -59.4 NC_002512.2 + 80659 0.68 0.796655
Target:  5'- cGC-CGGG-UCcgUCGGUCCCGcGGCGGc -3'
miRNA:   3'- -CGaGCCCuAGa-GGCUAGGGU-CCGCCa -5'
9005 3' -59.4 NC_002512.2 + 103496 0.68 0.761591
Target:  5'- cGCcCGGGGcC-CCGGgcgcucUCCCGGGCGGc -3'
miRNA:   3'- -CGaGCCCUaGaGGCU------AGGGUCCGCCa -5'
9005 3' -59.4 NC_002512.2 + 7729 0.68 0.75255
Target:  5'- gGCgUCGGGAUag-CGGUCCUcggGGGCGGa -3'
miRNA:   3'- -CG-AGCCCUAgagGCUAGGG---UCCGCCa -5'
9005 3' -59.4 NC_002512.2 + 201747 0.69 0.743413
Target:  5'- gGCUgGGGcg--CCGAUCCCGGG-GGa -3'
miRNA:   3'- -CGAgCCCuagaGGCUAGGGUCCgCCa -5'
9005 3' -59.4 NC_002512.2 + 207829 0.69 0.73419
Target:  5'- aCUCGGcGUCUcCCGAUCCC-GGCGc- -3'
miRNA:   3'- cGAGCCcUAGA-GGCUAGGGuCCGCca -5'
9005 3' -59.4 NC_002512.2 + 46485 0.69 0.723953
Target:  5'- cGCUCuuGGGcAUCU-CGAUCCCggugucgAGGCGGa -3'
miRNA:   3'- -CGAG--CCC-UAGAgGCUAGGG-------UCCGCCa -5'
9005 3' -59.4 NC_002512.2 + 127073 0.69 0.706075
Target:  5'- -aUCGGGuAUC-CCGuUCCCGGaGCGGa -3'
miRNA:   3'- cgAGCCC-UAGaGGCuAGGGUC-CGCCa -5'
9005 3' -59.4 NC_002512.2 + 219837 0.69 0.706075
Target:  5'- cGgUCGGGGggUCCGG-CCCggGGGCGGa -3'
miRNA:   3'- -CgAGCCCUagAGGCUaGGG--UCCGCCa -5'
9005 3' -59.4 NC_002512.2 + 99390 0.69 0.696582
Target:  5'- aGCgUCGGGGUC-CgGAcUCCCGgGGCGGc -3'
miRNA:   3'- -CG-AGCCCUAGaGgCU-AGGGU-CCGCCa -5'
9005 3' -59.4 NC_002512.2 + 198695 0.7 0.667841
Target:  5'- -gUCGGGGgguUCUUCGGacgucgaggUCaCCAGGCGGUg -3'
miRNA:   3'- cgAGCCCU---AGAGGCU---------AG-GGUCCGCCA- -5'
9005 3' -59.4 NC_002512.2 + 198518 0.7 0.667841
Target:  5'- cGCUCGGGucgcCUUCGAUCuCCAGcucGUGGUc -3'
miRNA:   3'- -CGAGCCCua--GAGGCUAG-GGUC---CGCCA- -5'
9005 3' -59.4 NC_002512.2 + 72502 0.7 0.667841
Target:  5'- aGC-CGGcGAUCucgUCCGGUCCCugcccGGCGGc -3'
miRNA:   3'- -CGaGCC-CUAG---AGGCUAGGGu----CCGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.