miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9009 3' -54.9 NC_002512.2 + 131236 0.68 0.920998
Target:  5'- cGCAUGUCUGCCgaCGAAcuccCCUCCGu -3'
miRNA:   3'- aUGUACAGGCGGa-GCUUca--GGAGGUc -5'
9009 3' -54.9 NC_002512.2 + 113645 0.68 0.915376
Target:  5'- cUGCAgggUgGCCUCGuGGUUCUCCGGg -3'
miRNA:   3'- -AUGUacaGgCGGAGCuUCAGGAGGUC- -5'
9009 3' -54.9 NC_002512.2 + 214641 0.68 0.915376
Target:  5'- cGCGgg-CCGCCUCGcAGUCuCUCCu- -3'
miRNA:   3'- aUGUacaGGCGGAGCuUCAG-GAGGuc -5'
9009 3' -54.9 NC_002512.2 + 106285 0.68 0.909522
Target:  5'- cUGCAgucuuUCCGCCgCGgcGUCCUCuCAGa -3'
miRNA:   3'- -AUGUac---AGGCGGaGCuuCAGGAG-GUC- -5'
9009 3' -54.9 NC_002512.2 + 84156 0.68 0.909522
Target:  5'- cGCGUGgCCGCgCggGAGGUCCcggUCCAGg -3'
miRNA:   3'- aUGUACaGGCG-GagCUUCAGG---AGGUC- -5'
9009 3' -54.9 NC_002512.2 + 105700 0.69 0.903438
Target:  5'- gUGCGUGccgaacgCCGCgCUCGggGUCCgcucCCAc -3'
miRNA:   3'- -AUGUACa------GGCG-GAGCuuCAGGa---GGUc -5'
9009 3' -54.9 NC_002512.2 + 218272 0.69 0.903438
Target:  5'- -cCAUGuacucauucuccUCgGCCUCGggGUCC-CCGGc -3'
miRNA:   3'- auGUAC------------AGgCGGAGCuuCAGGaGGUC- -5'
9009 3' -54.9 NC_002512.2 + 139272 0.69 0.897127
Target:  5'- cGCGcUGUCCGCCUUGucccGGUCCaCCGu -3'
miRNA:   3'- aUGU-ACAGGCGGAGCu---UCAGGaGGUc -5'
9009 3' -54.9 NC_002512.2 + 187263 0.69 0.897127
Target:  5'- gUugAUGgcggacgUCGCCUCGAAGUgCCcCCGGg -3'
miRNA:   3'- -AugUACa------GGCGGAGCUUCA-GGaGGUC- -5'
9009 3' -54.9 NC_002512.2 + 5798 0.69 0.890591
Target:  5'- gACAcgGUCCcCCU-GAGGUCCUCCGu -3'
miRNA:   3'- aUGUa-CAGGcGGAgCUUCAGGAGGUc -5'
9009 3' -54.9 NC_002512.2 + 132028 0.69 0.890591
Target:  5'- gGCggGUCCGUCUCGGucgucgCCUCCGc -3'
miRNA:   3'- aUGuaCAGGCGGAGCUuca---GGAGGUc -5'
9009 3' -54.9 NC_002512.2 + 225868 0.69 0.883833
Target:  5'- gUACAUGaacacggcUCCGCCUCGGGaauacugcUCCUUCAGg -3'
miRNA:   3'- -AUGUAC--------AGGCGGAGCUUc-------AGGAGGUC- -5'
9009 3' -54.9 NC_002512.2 + 91064 0.69 0.876859
Target:  5'- ----cGUCCGCCUgGAGGUCgCaCCGGg -3'
miRNA:   3'- auguaCAGGCGGAgCUUCAG-GaGGUC- -5'
9009 3' -54.9 NC_002512.2 + 82190 0.69 0.876859
Target:  5'- aGCccGUCCGCCgUCGGGccggcGUCCUcCCGGg -3'
miRNA:   3'- aUGuaCAGGCGG-AGCUU-----CAGGA-GGUC- -5'
9009 3' -54.9 NC_002512.2 + 73809 0.69 0.869671
Target:  5'- gUugGUGU-CGCCagGggGUCCUCCuGa -3'
miRNA:   3'- -AugUACAgGCGGagCuuCAGGAGGuC- -5'
9009 3' -54.9 NC_002512.2 + 40134 0.7 0.862276
Target:  5'- ---uUGUCCcccGCCUCGAAGaCCUCCu- -3'
miRNA:   3'- auguACAGG---CGGAGCUUCaGGAGGuc -5'
9009 3' -54.9 NC_002512.2 + 157346 0.7 0.846885
Target:  5'- -cCGUGuUCCGCCUggccgcCGAGGUCCgggccgCCGGg -3'
miRNA:   3'- auGUAC-AGGCGGA------GCUUCAGGa-----GGUC- -5'
9009 3' -54.9 NC_002512.2 + 227553 0.7 0.830735
Target:  5'- gGCggGUCCGCgacCGAGG-CCUCCGGa -3'
miRNA:   3'- aUGuaCAGGCGga-GCUUCaGGAGGUC- -5'
9009 3' -54.9 NC_002512.2 + 100430 0.71 0.822392
Target:  5'- ----cGUCCgaggGCCUCGcAGGUCUUCCGGg -3'
miRNA:   3'- auguaCAGG----CGGAGC-UUCAGGAGGUC- -5'
9009 3' -54.9 NC_002512.2 + 140537 0.71 0.822392
Target:  5'- gACGg--CCGCCUCGAcgccguucuGGUCCUCUAc -3'
miRNA:   3'- aUGUacaGGCGGAGCU---------UCAGGAGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.