miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9009 5' -58.6 NC_002512.2 + 153716 0.68 0.813637
Target:  5'- gUCCUGGucGGGUCUcacggCGCUGuCCGUGgGg -3'
miRNA:   3'- -AGGACCu-CCUAGAa----GUGGC-GGCGCgC- -5'
9009 5' -58.6 NC_002512.2 + 146142 0.67 0.829926
Target:  5'- gCCgccGGAagaucggcaugcGGAUCgucauccCGCUGCCGCGCGg -3'
miRNA:   3'- aGGa--CCU------------CCUAGaa-----GUGGCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 135792 0.67 0.829926
Target:  5'- ---cGGAGGAgUCggaccggcCGCCGCCGuCGCGg -3'
miRNA:   3'- aggaCCUCCU-AGaa------GUGGCGGC-GCGC- -5'
9009 5' -58.6 NC_002512.2 + 126321 0.67 0.829926
Target:  5'- cUCCUGGAcGA-CgagGCCGCCGCGUc -3'
miRNA:   3'- -AGGACCUcCUaGaagUGGCGGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 145403 0.67 0.829926
Target:  5'- gUCCgGGGuccGGGUCUUCuucggcucguCCGCCGCGg- -3'
miRNA:   3'- -AGGaCCU---CCUAGAAGu---------GGCGGCGCgc -5'
9009 5' -58.6 NC_002512.2 + 84451 0.67 0.829926
Target:  5'- ---cGGAGGAUCUcguccagCACCGCgGCGg- -3'
miRNA:   3'- aggaCCUCCUAGAa------GUGGCGgCGCgc -5'
9009 5' -58.6 NC_002512.2 + 170906 0.67 0.837829
Target:  5'- gCCUGGAcacgcuGcgCUUCgagccgauGCUGCCGCGCGu -3'
miRNA:   3'- aGGACCUc-----CuaGAAG--------UGGCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 92893 0.67 0.837829
Target:  5'- cUCCUGGAGGcugGUCgaggcgaaCAgCGUCGCGUa -3'
miRNA:   3'- -AGGACCUCC---UAGaa------GUgGCGGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 123201 0.67 0.837829
Target:  5'- aCgaGGAGGAgCUgcccgaggacgUCGCCGCCcaGUGCGg -3'
miRNA:   3'- aGgaCCUCCUaGA-----------AGUGGCGG--CGCGC- -5'
9009 5' -58.6 NC_002512.2 + 143531 0.67 0.844797
Target:  5'- gCCUGGcGGccUCgUCGCCgucggcgGCCGCGCGu -3'
miRNA:   3'- aGGACCuCCu-AGaAGUGG-------CGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 187547 0.67 0.845563
Target:  5'- gCCUGGuccgucucGAUCUgu-CCGUCGCGCGc -3'
miRNA:   3'- aGGACCuc------CUAGAaguGGCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 184951 0.67 0.845563
Target:  5'- gCCUGGcucgagagcauGGAgcg-CGuCCGCCGCGCGg -3'
miRNA:   3'- aGGACCu----------CCUagaaGU-GGCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 166385 0.67 0.845563
Target:  5'- aUCCUGGAGGAguguu-CCGCC-CGgGg -3'
miRNA:   3'- -AGGACCUCCUagaaguGGCGGcGCgC- -5'
9009 5' -58.6 NC_002512.2 + 7454 0.67 0.845563
Target:  5'- gCCcGGGGGAa----GCCGCgGCGCGg -3'
miRNA:   3'- aGGaCCUCCUagaagUGGCGgCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 135014 0.67 0.850872
Target:  5'- gUCCUGGAGGAUUcggGCCggcggacggaucucGCCGCGg- -3'
miRNA:   3'- -AGGACCUCCUAGaagUGG--------------CGGCGCgc -5'
9009 5' -58.6 NC_002512.2 + 173327 0.67 0.85312
Target:  5'- gCCUGcGGGGUCUUCGgucCCGgCaCGCGCc -3'
miRNA:   3'- aGGACcUCCUAGAAGU---GGC-G-GCGCGc -5'
9009 5' -58.6 NC_002512.2 + 73974 0.67 0.85312
Target:  5'- -gCUGGAGGAcgcgUCggCGCCGgacucguccCCGCGCc -3'
miRNA:   3'- agGACCUCCU----AGaaGUGGC---------GGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 124997 0.67 0.85312
Target:  5'- cCCUGGAcccGGccccgucgcgccGUCggCGCCGCCcgcuGCGCGa -3'
miRNA:   3'- aGGACCU---CC------------UAGaaGUGGCGG----CGCGC- -5'
9009 5' -58.6 NC_002512.2 + 4887 0.67 0.856093
Target:  5'- -gCUGGAGGAgcggCgacgggaagagggCGCCGCCGcCGCc -3'
miRNA:   3'- agGACCUCCUa---Gaa-----------GUGGCGGC-GCGc -5'
9009 5' -58.6 NC_002512.2 + 70774 0.67 0.859036
Target:  5'- cUUCUGGGGcaGAUCccgucguccucgUCGCCGuuGCGCa -3'
miRNA:   3'- -AGGACCUC--CUAGa-----------AGUGGCggCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.