miRNA display CGI


Results 1 - 20 of 94 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9009 5' -58.6 NC_002512.2 + 167257 0.66 0.906633
Target:  5'- gUCCUGGucaagguggcgGGGAagCUggcCGCCGCCGUcacccGCGa -3'
miRNA:   3'- -AGGACC-----------UCCUa-GAa--GUGGCGGCG-----CGC- -5'
9009 5' -58.6 NC_002512.2 + 166385 0.67 0.845563
Target:  5'- aUCCUGGAGGAguguu-CCGCC-CGgGg -3'
miRNA:   3'- -AGGACCUCCUagaaguGGCGGcGCgC- -5'
9009 5' -58.6 NC_002512.2 + 143531 0.67 0.844797
Target:  5'- gCCUGGcGGccUCgUCGCCgucggcgGCCGCGCGu -3'
miRNA:   3'- aGGACCuCCu-AGaAGUGG-------CGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 174065 1.09 0.002606
Target:  5'- cUCCUGGAGGAUCUUCACCGCCGCGCGg -3'
miRNA:   3'- -AGGACCUCCUAGAAGUGGCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 134178 0.66 0.894473
Target:  5'- cCCUGGcGGcguUCUUCGgCGaCGUGCGg -3'
miRNA:   3'- aGGACCuCCu--AGAAGUgGCgGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 193231 0.66 0.888079
Target:  5'- gCCUGG-GGGUCa--ACUGCCGacgGCGg -3'
miRNA:   3'- aGGACCuCCUAGaagUGGCGGCg--CGC- -5'
9009 5' -58.6 NC_002512.2 + 127830 0.66 0.881481
Target:  5'- cUCCgGGAGGucGUCggcggCGuCCGCCGCGa- -3'
miRNA:   3'- -AGGaCCUCC--UAGaa---GU-GGCGGCGCgc -5'
9009 5' -58.6 NC_002512.2 + 215093 0.66 0.874681
Target:  5'- aCC--GAGGAcuUCgUCGCCGCCGCGg- -3'
miRNA:   3'- aGGacCUCCU--AGaAGUGGCGGCGCgc -5'
9009 5' -58.6 NC_002512.2 + 185652 0.67 0.861224
Target:  5'- cUCCUGGGGGAcgucgcggggauccUgaaguccuucggucuCUUCugCGCCucgcuGCGCGa -3'
miRNA:   3'- -AGGACCUCCU--------------A---------------GAAGugGCGG-----CGCGC- -5'
9009 5' -58.6 NC_002512.2 + 187547 0.67 0.845563
Target:  5'- gCCUGGuccgucucGAUCUgu-CCGUCGCGCGc -3'
miRNA:   3'- aGGACCuc------CUAGAaguGGCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 202126 0.67 0.860496
Target:  5'- -gCUGGuGGcgccgGUCUcggcCGCCGCCGCGgGg -3'
miRNA:   3'- agGACCuCC-----UAGAa---GUGGCGGCGCgC- -5'
9009 5' -58.6 NC_002512.2 + 35803 0.66 0.873298
Target:  5'- uUCUUGGAGGAUCgcggacaguCUGCUGCaGCu -3'
miRNA:   3'- -AGGACCUCCUAGaagu-----GGCGGCG-CGc -5'
9009 5' -58.6 NC_002512.2 + 110373 0.66 0.906633
Target:  5'- aCCUGGugguGGcgCUgaUCAUgGCCGUGUa -3'
miRNA:   3'- aGGACCu---CCuaGA--AGUGgCGGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 124997 0.67 0.85312
Target:  5'- cCCUGGAcccGGccccgucgcgccGUCggCGCCGCCcgcuGCGCGa -3'
miRNA:   3'- aGGACCU---CC------------UAGaaGUGGCGG----CGCGC- -5'
9009 5' -58.6 NC_002512.2 + 121048 0.66 0.900658
Target:  5'- cUCUGGGccGGGUaccCGCCGCCcgagGCGCGg -3'
miRNA:   3'- aGGACCU--CCUAgaaGUGGCGG----CGCGC- -5'
9009 5' -58.6 NC_002512.2 + 128902 0.66 0.874681
Target:  5'- gCCUGGc-GAUCcgC-CCGCCGCGgGa -3'
miRNA:   3'- aGGACCucCUAGaaGuGGCGGCGCgC- -5'
9009 5' -58.6 NC_002512.2 + 173327 0.67 0.85312
Target:  5'- gCCUGcGGGGUCUUCGgucCCGgCaCGCGCc -3'
miRNA:   3'- aGGACcUCCUAGAAGU---GGC-G-GCGCGc -5'
9009 5' -58.6 NC_002512.2 + 184951 0.67 0.845563
Target:  5'- gCCUGGcucgagagcauGGAgcg-CGuCCGCCGCGCGg -3'
miRNA:   3'- aGGACCu----------CCUagaaGU-GGCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 110617 0.66 0.896351
Target:  5'- gUCCUGGgcggcgcagaccauGGGGUCgccgggauccaGCCGCCGCuCGa -3'
miRNA:   3'- -AGGACC--------------UCCUAGaag--------UGGCGGCGcGC- -5'
9009 5' -58.6 NC_002512.2 + 185429 0.66 0.881481
Target:  5'- cCCUGGAGG-UCUUCGagGCCGUc-- -3'
miRNA:   3'- aGGACCUCCuAGAAGUggCGGCGcgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.