miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9010 5' -56.6 NC_002512.2 + 173764 1.1 0.00338
Target:  5'- cGCCAAGUACGUGAAGGUCCCCGGGCAc -3'
miRNA:   3'- -CGGUUCAUGCACUUCCAGGGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 108530 0.77 0.438117
Target:  5'- gGCCGGGgacccgACGgcggaGAAGGUCCgCCGGGCc -3'
miRNA:   3'- -CGGUUCa-----UGCa----CUUCCAGG-GGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 131886 0.75 0.491151
Target:  5'- gGCCAccAGcACGUgcucgucGAAGGUCCCCgGGGCGu -3'
miRNA:   3'- -CGGU--UCaUGCA-------CUUCCAGGGG-CCCGU- -5'
9010 5' -56.6 NC_002512.2 + 108438 0.75 0.520184
Target:  5'- gGCCGGGggcCG-GggGGucccUCCCCGGGCGg -3'
miRNA:   3'- -CGGUUCau-GCaCuuCC----AGGGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 73207 0.74 0.546005
Target:  5'- gGCCAGGUggcagggcccguacGCGUcgucgcgggcGAAGGUCCCCucgaaGGGCAc -3'
miRNA:   3'- -CGGUUCA--------------UGCA----------CUUCCAGGGG-----CCCGU- -5'
9010 5' -56.6 NC_002512.2 + 28053 0.73 0.647165
Target:  5'- uGCCGGccGCG-GAAGGagcCCCCGGGCGc -3'
miRNA:   3'- -CGGUUcaUGCaCUUCCa--GGGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 152871 0.72 0.657045
Target:  5'- aGCCGGuGUGCGgGAGcGGUCCCCGGuCGg -3'
miRNA:   3'- -CGGUU-CAUGCaCUU-CCAGGGGCCcGU- -5'
9010 5' -56.6 NC_002512.2 + 95140 0.72 0.66395
Target:  5'- gGCCAGGUcugccagcguggagGCGUGGAGcGUCCUCGcguaGGCGg -3'
miRNA:   3'- -CGGUUCA--------------UGCACUUC-CAGGGGC----CCGU- -5'
9010 5' -56.6 NC_002512.2 + 31712 0.72 0.706009
Target:  5'- cGCCG---ACGUGGAGGUCCgCCGgccGGCGc -3'
miRNA:   3'- -CGGUucaUGCACUUCCAGG-GGC---CCGU- -5'
9010 5' -56.6 NC_002512.2 + 115976 0.71 0.715659
Target:  5'- aCCAGGUGCGgcgcGAGGUCCCCcGGaCGa -3'
miRNA:   3'- cGGUUCAUGCac--UUCCAGGGGcCC-GU- -5'
9010 5' -56.6 NC_002512.2 + 89405 0.71 0.715659
Target:  5'- gGCCAGGUucGCGcgGAaccAGG-CCUCGGGCGu -3'
miRNA:   3'- -CGGUUCA--UGCa-CU---UCCaGGGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 122674 0.71 0.734751
Target:  5'- aCCAGGUgACGgcGAGGGg-CCCGGGCGa -3'
miRNA:   3'- cGGUUCA-UGCa-CUUCCagGGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 15451 0.71 0.75351
Target:  5'- cGCCGAcGUagACGgGGAcgcGGUCCUCGGGCGc -3'
miRNA:   3'- -CGGUU-CA--UGCaCUU---CCAGGGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 229580 0.71 0.762743
Target:  5'- cGCCGGGagggACGggggcgaGAAGGggCCCGGGCGg -3'
miRNA:   3'- -CGGUUCa---UGCa------CUUCCagGGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 177 0.71 0.762743
Target:  5'- cGCCGGGagggACGggggcgaGAAGGggCCCGGGCGg -3'
miRNA:   3'- -CGGUUCa---UGCa------CUUCCagGGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 158693 0.7 0.771869
Target:  5'- gGCCGGG-ACGgGGAGGUgCCCGaGGUg -3'
miRNA:   3'- -CGGUUCaUGCaCUUCCAgGGGC-CCGu -5'
9010 5' -56.6 NC_002512.2 + 102301 0.7 0.789762
Target:  5'- cGCCAGGgcgACGUcgcGGAcGGUCCgUCGGGCc -3'
miRNA:   3'- -CGGUUCa--UGCA---CUU-CCAGG-GGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 136218 0.7 0.789762
Target:  5'- gGCCuGGUGCGcGggGGUCagcgugCUGGGCu -3'
miRNA:   3'- -CGGuUCAUGCaCuuCCAGg-----GGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 211315 0.69 0.815586
Target:  5'- uCCGAGcgcauCGUGgcGGUCcgggCCCGGGCGc -3'
miRNA:   3'- cGGUUCau---GCACuuCCAG----GGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 45963 0.69 0.815586
Target:  5'- aGCCGAGc-CGcUGAAGGgUCCCGaGGCAg -3'
miRNA:   3'- -CGGUUCauGC-ACUUCCaGGGGC-CCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.