miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9010 5' -56.6 NC_002512.2 + 177 0.71 0.762743
Target:  5'- cGCCGGGagggACGggggcgaGAAGGggCCCGGGCGg -3'
miRNA:   3'- -CGGUUCa---UGCa------CUUCCagGGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 7118 0.68 0.870078
Target:  5'- aGCUuGGUugGcGAgacAGGUCCCuCGGGUc -3'
miRNA:   3'- -CGGuUCAugCaCU---UCCAGGG-GCCCGu -5'
9010 5' -56.6 NC_002512.2 + 10447 0.67 0.919316
Target:  5'- gGCaCGGGgGCGcGGAGGaggccgccgccgCCCCGGGCGu -3'
miRNA:   3'- -CG-GUUCaUGCaCUUCCa-----------GGGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 15451 0.71 0.75351
Target:  5'- cGCCGAcGUagACGgGGAcgcGGUCCUCGGGCGc -3'
miRNA:   3'- -CGGUU-CA--UGCaCUU---CCAGGGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 16864 0.66 0.944707
Target:  5'- aGCCGGcggACGcaccucgaGAGGG-CCCCGGGCc -3'
miRNA:   3'- -CGGUUca-UGCa-------CUUCCaGGGGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 22003 0.66 0.948904
Target:  5'- cGCCGAGaGCGccaGAAGccGUCCCCGGa-- -3'
miRNA:   3'- -CGGUUCaUGCa--CUUC--CAGGGGCCcgu -5'
9010 5' -56.6 NC_002512.2 + 28053 0.73 0.647165
Target:  5'- uGCCGGccGCG-GAAGGagcCCCCGGGCGc -3'
miRNA:   3'- -CGGUUcaUGCaCUUCCa--GGGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 31712 0.72 0.706009
Target:  5'- cGCCG---ACGUGGAGGUCCgCCGgccGGCGc -3'
miRNA:   3'- -CGGUucaUGCACUUCCAGG-GGC---CCGU- -5'
9010 5' -56.6 NC_002512.2 + 42186 0.67 0.925711
Target:  5'- aGCCAGGgucggGgGUucGGGUUCCCGGuGCc -3'
miRNA:   3'- -CGGUUCa----UgCAcuUCCAGGGGCC-CGu -5'
9010 5' -56.6 NC_002512.2 + 45963 0.69 0.815586
Target:  5'- aGCCGAGc-CGcUGAAGGgUCCCGaGGCAg -3'
miRNA:   3'- -CGGUUCauGC-ACUUCCaGGGGC-CCGU- -5'
9010 5' -56.6 NC_002512.2 + 64650 0.66 0.930794
Target:  5'- cGCgAGGU-CGUGGaucacgucgcggAGGUCCucgCCGGGCc -3'
miRNA:   3'- -CGgUUCAuGCACU------------UCCAGG---GGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 73207 0.74 0.546005
Target:  5'- gGCCAGGUggcagggcccguacGCGUcgucgcgggcGAAGGUCCCCucgaaGGGCAc -3'
miRNA:   3'- -CGGUUCA--------------UGCA----------CUUCCAGGGG-----CCCGU- -5'
9010 5' -56.6 NC_002512.2 + 79980 0.66 0.952883
Target:  5'- gGCCGAGgaggGCGcgcGGAGGUCCa--GGCAg -3'
miRNA:   3'- -CGGUUCa---UGCa--CUUCCAGGggcCCGU- -5'
9010 5' -56.6 NC_002512.2 + 81556 0.66 0.948904
Target:  5'- -aCGGGU-CGUGcGGGUUCaCGGGCAg -3'
miRNA:   3'- cgGUUCAuGCACuUCCAGGgGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 83057 0.68 0.869364
Target:  5'- gGCCAGGcgaccucgcGCGcGAAGGUCuccagguCCCGGGCc -3'
miRNA:   3'- -CGGUUCa--------UGCaCUUCCAG-------GGGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 89405 0.71 0.715659
Target:  5'- gGCCAGGUucGCGcgGAaccAGG-CCUCGGGCGu -3'
miRNA:   3'- -CGGUUCA--UGCa-CU---UCCaGGGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 90691 0.69 0.853157
Target:  5'- gGCCAGGUccucgacggcgucgGCGUGAcagGGGUCCaCCauguGGCGg -3'
miRNA:   3'- -CGGUUCA--------------UGCACU---UCCAGG-GGc---CCGU- -5'
9010 5' -56.6 NC_002512.2 + 94898 0.66 0.948904
Target:  5'- -aCGGGUagGCGUcccGGUCgCCGGGCAg -3'
miRNA:   3'- cgGUUCA--UGCAcuuCCAGgGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 94994 0.66 0.948494
Target:  5'- -aCAGGUGCGcguccGAgcaguccAGGUCCCCGacGGCGu -3'
miRNA:   3'- cgGUUCAUGCa----CU-------UCCAGGGGC--CCGU- -5'
9010 5' -56.6 NC_002512.2 + 95140 0.72 0.66395
Target:  5'- gGCCAGGUcugccagcguggagGCGUGGAGcGUCCUCGcguaGGCGg -3'
miRNA:   3'- -CGGUUCA--------------UGCACUUC-CAGGGGC----CCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.