miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9010 5' -56.6 NC_002512.2 + 95263 0.66 0.942084
Target:  5'- gGCCAGGgcACG-GAguagaccaggacgcaGGGgaaCCCGGGCAg -3'
miRNA:   3'- -CGGUUCa-UGCaCU---------------UCCag-GGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 101573 0.69 0.855421
Target:  5'- gGUCGAGgucgaGCGU-AGGGUCCCCGcGGUc -3'
miRNA:   3'- -CGGUUCa----UGCAcUUCCAGGGGC-CCGu -5'
9010 5' -56.6 NC_002512.2 + 102301 0.7 0.789762
Target:  5'- cGCCAGGgcgACGUcgcGGAcGGUCCgUCGGGCc -3'
miRNA:   3'- -CGGUUCa--UGCA---CUU-CCAGG-GGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 104980 0.66 0.940291
Target:  5'- cGCCucgAGGUAgG-GGAGGUagCCCGGGUu -3'
miRNA:   3'- -CGG---UUCAUgCaCUUCCAg-GGGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 105091 0.66 0.935654
Target:  5'- gGUCGGGUcgACGUGuc--UCCCCGGGUc -3'
miRNA:   3'- -CGGUUCA--UGCACuuccAGGGGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 108438 0.75 0.520184
Target:  5'- gGCCGGGggcCG-GggGGucccUCCCCGGGCGg -3'
miRNA:   3'- -CGGUUCau-GCaCuuCC----AGGGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 108470 0.67 0.903151
Target:  5'- cGCCGGGUucgcgcugaACGUGAcGGUCgUCaaGGGCGa -3'
miRNA:   3'- -CGGUUCA---------UGCACUuCCAGgGG--CCCGU- -5'
9010 5' -56.6 NC_002512.2 + 108530 0.77 0.438117
Target:  5'- gGCCGGGgacccgACGgcggaGAAGGUCCgCCGGGCc -3'
miRNA:   3'- -CGGUUCa-----UGCa----CUUCCAGG-GGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 109739 0.68 0.89696
Target:  5'- gGCCGGuUGCGc--GGGUCCUCGGGUc -3'
miRNA:   3'- -CGGUUcAUGCacuUCCAGGGGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 109797 0.67 0.908536
Target:  5'- cGCCAGGgggaggGCGaacaggaucagucUGAGGGgagUCCCCugGGGCGg -3'
miRNA:   3'- -CGGUUCa-----UGC-------------ACUUCC---AGGGG--CCCGU- -5'
9010 5' -56.6 NC_002512.2 + 111874 0.68 0.890554
Target:  5'- uGUCGguGGU-CGUGAGGG-CCUCGaGGCAa -3'
miRNA:   3'- -CGGU--UCAuGCACUUCCaGGGGC-CCGU- -5'
9010 5' -56.6 NC_002512.2 + 112612 0.67 0.920404
Target:  5'- uUCAGGUACGUGcGGaUgUCCGGGCu -3'
miRNA:   3'- cGGUUCAUGCACuUCcAgGGGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 115976 0.71 0.715659
Target:  5'- aCCAGGUGCGgcgcGAGGUCCCCcGGaCGa -3'
miRNA:   3'- cGGUUCAUGCac--UUCCAGGGGcCC-GU- -5'
9010 5' -56.6 NC_002512.2 + 117522 0.66 0.930794
Target:  5'- cGCCAu---CGUGcccAAGGUgUCCGGGCu -3'
miRNA:   3'- -CGGUucauGCAC---UUCCAgGGGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 122674 0.71 0.734751
Target:  5'- aCCAGGUgACGgcGAGGGg-CCCGGGCGa -3'
miRNA:   3'- cGGUUCA-UGCa-CUUCCagGGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 124214 0.66 0.944707
Target:  5'- aCCAccGU-CGUGuuccAGGUCCCgGGGCu -3'
miRNA:   3'- cGGUu-CAuGCACu---UCCAGGGgCCCGu -5'
9010 5' -56.6 NC_002512.2 + 126385 0.66 0.930794
Target:  5'- cGCCcggGAGaGCGcccGGGG-CCCCGGGCGc -3'
miRNA:   3'- -CGG---UUCaUGCac-UUCCaGGGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 128690 0.68 0.870078
Target:  5'- gGCCGu---CGUGAucggcaagGGGUCCuUCGGGCAg -3'
miRNA:   3'- -CGGUucauGCACU--------UCCAGG-GGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 131886 0.75 0.491151
Target:  5'- gGCCAccAGcACGUgcucgucGAAGGUCCCCgGGGCGu -3'
miRNA:   3'- -CGGU--UCaUGCA-------CUUCCAGGGG-CCCGU- -5'
9010 5' -56.6 NC_002512.2 + 131987 0.68 0.89696
Target:  5'- -aCGAGgucGCGUGGGccgCCCCGGGCGc -3'
miRNA:   3'- cgGUUCa--UGCACUUccaGGGGCCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.