Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9010 | 5' | -56.6 | NC_002512.2 | + | 101573 | 0.69 | 0.855421 |
Target: 5'- gGUCGAGgucgaGCGU-AGGGUCCCCGcGGUc -3' miRNA: 3'- -CGGUUCa----UGCAcUUCCAGGGGC-CCGu -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 83057 | 0.68 | 0.869364 |
Target: 5'- gGCCAGGcgaccucgcGCGcGAAGGUCuccagguCCCGGGCc -3' miRNA: 3'- -CGGUUCa--------UGCaCUUCCAG-------GGGCCCGu -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 128690 | 0.68 | 0.870078 |
Target: 5'- gGCCGu---CGUGAucggcaagGGGUCCuUCGGGCAg -3' miRNA: 3'- -CGGUucauGCACU--------UCCAGG-GGCCCGU- -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 126385 | 0.66 | 0.930794 |
Target: 5'- cGCCcggGAGaGCGcccGGGG-CCCCGGGCGc -3' miRNA: 3'- -CGG---UUCaUGCac-UUCCaGGGGCCCGU- -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 185842 | 0.67 | 0.913173 |
Target: 5'- cCCAguucuucugggagcGGUACGUcgaGGAGGgcgCCUCGGGCc -3' miRNA: 3'- cGGU--------------UCAUGCA---CUUCCa--GGGGCCCGu -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 108470 | 0.67 | 0.903151 |
Target: 5'- cGCCGGGUucgcgcugaACGUGAcGGUCgUCaaGGGCGa -3' miRNA: 3'- -CGGUUCA---------UGCACUuCCAGgGG--CCCGU- -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 153017 | 0.67 | 0.903151 |
Target: 5'- gGUCGGGUcgGCGgGAGcGGUCCCCGGuCGg -3' miRNA: 3'- -CGGUUCA--UGCaCUU-CCAGGGGCCcGU- -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 152967 | 0.67 | 0.903151 |
Target: 5'- gGUCGGGUcgGCGgGAGcGGUCCCCGGuCGg -3' miRNA: 3'- -CGGUUCA--UGCaCUU-CCAGGGGCCcGU- -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 131987 | 0.68 | 0.89696 |
Target: 5'- -aCGAGgucGCGUGGGccgCCCCGGGCGc -3' miRNA: 3'- cgGUUCa--UGCACUUccaGGGGCCCGU- -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 192861 | 0.68 | 0.89696 |
Target: 5'- cCCGAGUGacaGU---GGUCCCCGGGg- -3' miRNA: 3'- cGGUUCAUg--CAcuuCCAGGGGCCCgu -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 157340 | 0.66 | 0.932765 |
Target: 5'- -aCGAGUcCGUGuuccgccuggccgccGAGGUCCgggccgCCGGGCAg -3' miRNA: 3'- cgGUUCAuGCAC---------------UUCCAGG------GGCCCGU- -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 165564 | 0.66 | 0.935654 |
Target: 5'- uGCCAGGUcggcgACGUGguGG---CCGGGCAg -3' miRNA: 3'- -CGGUUCA-----UGCACuuCCaggGGCCCGU- -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 211765 | 0.66 | 0.935654 |
Target: 5'- cGCUgcggGAGgACGUGGAGG--CCCGGGUg -3' miRNA: 3'- -CGG----UUCaUGCACUUCCagGGGCCCGu -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 105091 | 0.66 | 0.935654 |
Target: 5'- gGUCGGGUcgACGUGuc--UCCCCGGGUc -3' miRNA: 3'- -CGGUUCA--UGCACuuccAGGGGCCCGu -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 104980 | 0.66 | 0.940291 |
Target: 5'- cGCCucgAGGUAgG-GGAGGUagCCCGGGUu -3' miRNA: 3'- -CGG---UUCAUgCaCUUCCAg-GGGCCCGu -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 95263 | 0.66 | 0.942084 |
Target: 5'- gGCCAGGgcACG-GAguagaccaggacgcaGGGgaaCCCGGGCAg -3' miRNA: 3'- -CGGUUCa-UGCaCU---------------UCCag-GGGCCCGU- -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 124214 | 0.66 | 0.944707 |
Target: 5'- aCCAccGU-CGUGuuccAGGUCCCgGGGCu -3' miRNA: 3'- cGGUu-CAuGCACu---UCCAGGGgCCCGu -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 191652 | 0.66 | 0.944707 |
Target: 5'- aGCCAGG-ACGgcGGAGacguccgcGUCCCgGGGCu -3' miRNA: 3'- -CGGUUCaUGCa-CUUC--------CAGGGgCCCGu -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 94994 | 0.66 | 0.948494 |
Target: 5'- -aCAGGUGCGcguccGAgcaguccAGGUCCCCGacGGCGu -3' miRNA: 3'- cgGUUCAUGCa----CU-------UCCAGGGGC--CCGU- -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 173764 | 1.1 | 0.00338 |
Target: 5'- cGCCAAGUACGUGAAGGUCCCCGGGCAc -3' miRNA: 3'- -CGGUUCAUGCACUUCCAGGGGCCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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