Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9010 | 5' | -56.6 | NC_002512.2 | + | 81556 | 0.66 | 0.948904 |
Target: 5'- -aCGGGU-CGUGcGGGUUCaCGGGCAg -3' miRNA: 3'- cgGUUCAuGCACuUCCAGGgGCCCGU- -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 135209 | 0.67 | 0.903151 |
Target: 5'- cGCCAgcGGgcCG-GggGGccccccggCCCCGGGCc -3' miRNA: 3'- -CGGU--UCauGCaCuuCCa-------GGGGCCCGu -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 109797 | 0.67 | 0.908536 |
Target: 5'- cGCCAGGgggaggGCGaacaggaucagucUGAGGGgagUCCCCugGGGCGg -3' miRNA: 3'- -CGGUUCa-----UGC-------------ACUUCC---AGGGG--CCCGU- -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 10447 | 0.67 | 0.919316 |
Target: 5'- gGCaCGGGgGCGcGGAGGaggccgccgccgCCCCGGGCGu -3' miRNA: 3'- -CG-GUUCaUGCaCUUCCa-----------GGGGCCCGU- -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 112612 | 0.67 | 0.920404 |
Target: 5'- uUCAGGUACGUGcGGaUgUCCGGGCu -3' miRNA: 3'- cGGUUCAUGCACuUCcAgGGGCCCGu -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 42186 | 0.67 | 0.925711 |
Target: 5'- aGCCAGGgucggGgGUucGGGUUCCCGGuGCc -3' miRNA: 3'- -CGGUUCa----UgCAcuUCCAGGGGCC-CGu -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 64650 | 0.66 | 0.930794 |
Target: 5'- cGCgAGGU-CGUGGaucacgucgcggAGGUCCucgCCGGGCc -3' miRNA: 3'- -CGgUUCAuGCACU------------UCCAGG---GGCCCGu -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 117522 | 0.66 | 0.930794 |
Target: 5'- cGCCAu---CGUGcccAAGGUgUCCGGGCu -3' miRNA: 3'- -CGGUucauGCAC---UUCCAgGGGCCCGu -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 16864 | 0.66 | 0.944707 |
Target: 5'- aGCCGGcggACGcaccucgaGAGGG-CCCCGGGCc -3' miRNA: 3'- -CGGUUca-UGCa-------CUUCCaGGGGCCCGu -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 109739 | 0.68 | 0.89696 |
Target: 5'- gGCCGGuUGCGc--GGGUCCUCGGGUc -3' miRNA: 3'- -CGGUUcAUGCacuUCCAGGGGCCCGu -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 152737 | 0.68 | 0.870078 |
Target: 5'- uUCGGGgGCGgucgGAAGGUCCCCcgacGGCGa -3' miRNA: 3'- cGGUUCaUGCa---CUUCCAGGGGc---CCGU- -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 128690 | 0.68 | 0.870078 |
Target: 5'- gGCCGu---CGUGAucggcaagGGGUCCuUCGGGCAg -3' miRNA: 3'- -CGGUucauGCACU--------UCCAGG-GGCCCGU- -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 28053 | 0.73 | 0.647165 |
Target: 5'- uGCCGGccGCG-GAAGGagcCCCCGGGCGc -3' miRNA: 3'- -CGGUUcaUGCaCUUCCa--GGGGCCCGU- -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 95140 | 0.72 | 0.66395 |
Target: 5'- gGCCAGGUcugccagcguggagGCGUGGAGcGUCCUCGcguaGGCGg -3' miRNA: 3'- -CGGUUCA--------------UGCACUUC-CAGGGGC----CCGU- -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 31712 | 0.72 | 0.706009 |
Target: 5'- cGCCG---ACGUGGAGGUCCgCCGgccGGCGc -3' miRNA: 3'- -CGGUucaUGCACUUCCAGG-GGC---CCGU- -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 15451 | 0.71 | 0.75351 |
Target: 5'- cGCCGAcGUagACGgGGAcgcGGUCCUCGGGCGc -3' miRNA: 3'- -CGGUU-CA--UGCaCUU---CCAGGGGCCCGU- -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 136218 | 0.7 | 0.789762 |
Target: 5'- gGCCuGGUGCGcGggGGUCagcgugCUGGGCu -3' miRNA: 3'- -CGGuUCAUGCaCuuCCAGg-----GGCCCGu -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 45963 | 0.69 | 0.815586 |
Target: 5'- aGCCGAGc-CGcUGAAGGgUCCCGaGGCAg -3' miRNA: 3'- -CGGUUCauGC-ACUUCCaGGGGC-CCGU- -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 101573 | 0.69 | 0.855421 |
Target: 5'- gGUCGAGgucgaGCGU-AGGGUCCCCGcGGUc -3' miRNA: 3'- -CGGUUCa----UGCAcUUCCAGGGGC-CCGu -5' |
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9010 | 5' | -56.6 | NC_002512.2 | + | 83057 | 0.68 | 0.869364 |
Target: 5'- gGCCAGGcgaccucgcGCGcGAAGGUCuccagguCCCGGGCc -3' miRNA: 3'- -CGGUUCa--------UGCaCUUCCAG-------GGGCCCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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