miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9010 5' -56.6 NC_002512.2 + 81556 0.66 0.948904
Target:  5'- -aCGGGU-CGUGcGGGUUCaCGGGCAg -3'
miRNA:   3'- cgGUUCAuGCACuUCCAGGgGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 135209 0.67 0.903151
Target:  5'- cGCCAgcGGgcCG-GggGGccccccggCCCCGGGCc -3'
miRNA:   3'- -CGGU--UCauGCaCuuCCa-------GGGGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 109797 0.67 0.908536
Target:  5'- cGCCAGGgggaggGCGaacaggaucagucUGAGGGgagUCCCCugGGGCGg -3'
miRNA:   3'- -CGGUUCa-----UGC-------------ACUUCC---AGGGG--CCCGU- -5'
9010 5' -56.6 NC_002512.2 + 10447 0.67 0.919316
Target:  5'- gGCaCGGGgGCGcGGAGGaggccgccgccgCCCCGGGCGu -3'
miRNA:   3'- -CG-GUUCaUGCaCUUCCa-----------GGGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 112612 0.67 0.920404
Target:  5'- uUCAGGUACGUGcGGaUgUCCGGGCu -3'
miRNA:   3'- cGGUUCAUGCACuUCcAgGGGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 42186 0.67 0.925711
Target:  5'- aGCCAGGgucggGgGUucGGGUUCCCGGuGCc -3'
miRNA:   3'- -CGGUUCa----UgCAcuUCCAGGGGCC-CGu -5'
9010 5' -56.6 NC_002512.2 + 64650 0.66 0.930794
Target:  5'- cGCgAGGU-CGUGGaucacgucgcggAGGUCCucgCCGGGCc -3'
miRNA:   3'- -CGgUUCAuGCACU------------UCCAGG---GGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 117522 0.66 0.930794
Target:  5'- cGCCAu---CGUGcccAAGGUgUCCGGGCu -3'
miRNA:   3'- -CGGUucauGCAC---UUCCAgGGGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 16864 0.66 0.944707
Target:  5'- aGCCGGcggACGcaccucgaGAGGG-CCCCGGGCc -3'
miRNA:   3'- -CGGUUca-UGCa-------CUUCCaGGGGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 109739 0.68 0.89696
Target:  5'- gGCCGGuUGCGc--GGGUCCUCGGGUc -3'
miRNA:   3'- -CGGUUcAUGCacuUCCAGGGGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 152737 0.68 0.870078
Target:  5'- uUCGGGgGCGgucgGAAGGUCCCCcgacGGCGa -3'
miRNA:   3'- cGGUUCaUGCa---CUUCCAGGGGc---CCGU- -5'
9010 5' -56.6 NC_002512.2 + 128690 0.68 0.870078
Target:  5'- gGCCGu---CGUGAucggcaagGGGUCCuUCGGGCAg -3'
miRNA:   3'- -CGGUucauGCACU--------UCCAGG-GGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 28053 0.73 0.647165
Target:  5'- uGCCGGccGCG-GAAGGagcCCCCGGGCGc -3'
miRNA:   3'- -CGGUUcaUGCaCUUCCa--GGGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 95140 0.72 0.66395
Target:  5'- gGCCAGGUcugccagcguggagGCGUGGAGcGUCCUCGcguaGGCGg -3'
miRNA:   3'- -CGGUUCA--------------UGCACUUC-CAGGGGC----CCGU- -5'
9010 5' -56.6 NC_002512.2 + 31712 0.72 0.706009
Target:  5'- cGCCG---ACGUGGAGGUCCgCCGgccGGCGc -3'
miRNA:   3'- -CGGUucaUGCACUUCCAGG-GGC---CCGU- -5'
9010 5' -56.6 NC_002512.2 + 15451 0.71 0.75351
Target:  5'- cGCCGAcGUagACGgGGAcgcGGUCCUCGGGCGc -3'
miRNA:   3'- -CGGUU-CA--UGCaCUU---CCAGGGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 136218 0.7 0.789762
Target:  5'- gGCCuGGUGCGcGggGGUCagcgugCUGGGCu -3'
miRNA:   3'- -CGGuUCAUGCaCuuCCAGg-----GGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 45963 0.69 0.815586
Target:  5'- aGCCGAGc-CGcUGAAGGgUCCCGaGGCAg -3'
miRNA:   3'- -CGGUUCauGC-ACUUCCaGGGGC-CCGU- -5'
9010 5' -56.6 NC_002512.2 + 101573 0.69 0.855421
Target:  5'- gGUCGAGgucgaGCGU-AGGGUCCCCGcGGUc -3'
miRNA:   3'- -CGGUUCa----UGCAcUUCCAGGGGC-CCGu -5'
9010 5' -56.6 NC_002512.2 + 83057 0.68 0.869364
Target:  5'- gGCCAGGcgaccucgcGCGcGAAGGUCuccagguCCCGGGCc -3'
miRNA:   3'- -CGGUUCa--------UGCaCUUCCAG-------GGGCCCGu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.