miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9010 5' -56.6 NC_002512.2 + 94898 0.66 0.948904
Target:  5'- -aCGGGUagGCGUcccGGUCgCCGGGCAg -3'
miRNA:   3'- cgGUUCA--UGCAcuuCCAGgGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 111874 0.68 0.890554
Target:  5'- uGUCGguGGU-CGUGAGGG-CCUCGaGGCAa -3'
miRNA:   3'- -CGGU--UCAuGCACUUCCaGGGGC-CCGU- -5'
9010 5' -56.6 NC_002512.2 + 7118 0.68 0.870078
Target:  5'- aGCUuGGUugGcGAgacAGGUCCCuCGGGUc -3'
miRNA:   3'- -CGGuUCAugCaCU---UCCAGGG-GCCCGu -5'
9010 5' -56.6 NC_002512.2 + 173764 1.1 0.00338
Target:  5'- cGCCAAGUACGUGAAGGUCCCCGGGCAc -3'
miRNA:   3'- -CGGUUCAUGCACUUCCAGGGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 95263 0.66 0.942084
Target:  5'- gGCCAGGgcACG-GAguagaccaggacgcaGGGgaaCCCGGGCAg -3'
miRNA:   3'- -CGGUUCa-UGCaCU---------------UCCag-GGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 104980 0.66 0.940291
Target:  5'- cGCCucgAGGUAgG-GGAGGUagCCCGGGUu -3'
miRNA:   3'- -CGG---UUCAUgCaCUUCCAg-GGGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 211765 0.66 0.935654
Target:  5'- cGCUgcggGAGgACGUGGAGG--CCCGGGUg -3'
miRNA:   3'- -CGG----UUCaUGCACUUCCagGGGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 165564 0.66 0.935654
Target:  5'- uGCCAGGUcggcgACGUGguGG---CCGGGCAg -3'
miRNA:   3'- -CGGUUCA-----UGCACuuCCaggGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 185842 0.67 0.913173
Target:  5'- cCCAguucuucugggagcGGUACGUcgaGGAGGgcgCCUCGGGCc -3'
miRNA:   3'- cGGU--------------UCAUGCA---CUUCCa--GGGGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 192861 0.68 0.89696
Target:  5'- cCCGAGUGacaGU---GGUCCCCGGGg- -3'
miRNA:   3'- cGGUUCAUg--CAcuuCCAGGGGCCCgu -5'
9010 5' -56.6 NC_002512.2 + 153017 0.67 0.903151
Target:  5'- gGUCGGGUcgGCGgGAGcGGUCCCCGGuCGg -3'
miRNA:   3'- -CGGUUCA--UGCaCUU-CCAGGGGCCcGU- -5'
9010 5' -56.6 NC_002512.2 + 126385 0.66 0.930794
Target:  5'- cGCCcggGAGaGCGcccGGGG-CCCCGGGCGc -3'
miRNA:   3'- -CGG---UUCaUGCac-UUCCaGGGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 94994 0.66 0.948494
Target:  5'- -aCAGGUGCGcguccGAgcaguccAGGUCCCCGacGGCGu -3'
miRNA:   3'- cgGUUCAUGCa----CU-------UCCAGGGGC--CCGU- -5'
9010 5' -56.6 NC_002512.2 + 152967 0.67 0.903151
Target:  5'- gGUCGGGUcgGCGgGAGcGGUCCCCGGuCGg -3'
miRNA:   3'- -CGGUUCA--UGCaCUU-CCAGGGGCCcGU- -5'
9010 5' -56.6 NC_002512.2 + 191652 0.66 0.944707
Target:  5'- aGCCAGG-ACGgcGGAGacguccgcGUCCCgGGGCu -3'
miRNA:   3'- -CGGUUCaUGCa-CUUC--------CAGGGgCCCGu -5'
9010 5' -56.6 NC_002512.2 + 157340 0.66 0.932765
Target:  5'- -aCGAGUcCGUGuuccgccuggccgccGAGGUCCgggccgCCGGGCAg -3'
miRNA:   3'- cgGUUCAuGCAC---------------UUCCAGG------GGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 131987 0.68 0.89696
Target:  5'- -aCGAGgucGCGUGGGccgCCCCGGGCGc -3'
miRNA:   3'- cgGUUCa--UGCACUUccaGGGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 226712 0.68 0.870078
Target:  5'- cGUCGAGcgACG-GGAGG-CCgCGGGCGa -3'
miRNA:   3'- -CGGUUCa-UGCaCUUCCaGGgGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 124214 0.66 0.944707
Target:  5'- aCCAccGU-CGUGuuccAGGUCCCgGGGCu -3'
miRNA:   3'- cGGUu-CAuGCACu---UCCAGGGgCCCGu -5'
9010 5' -56.6 NC_002512.2 + 105091 0.66 0.935654
Target:  5'- gGUCGGGUcgACGUGuc--UCCCCGGGUc -3'
miRNA:   3'- -CGGUUCA--UGCACuuccAGGGGCCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.