miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9010 5' -56.6 NC_002512.2 + 229580 0.71 0.762743
Target:  5'- cGCCGGGagggACGggggcgaGAAGGggCCCGGGCGg -3'
miRNA:   3'- -CGGUUCa---UGCa------CUUCCagGGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 226712 0.68 0.870078
Target:  5'- cGUCGAGcgACG-GGAGG-CCgCGGGCGa -3'
miRNA:   3'- -CGGUUCa-UGCaCUUCCaGGgGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 211765 0.66 0.935654
Target:  5'- cGCUgcggGAGgACGUGGAGG--CCCGGGUg -3'
miRNA:   3'- -CGG----UUCaUGCACUUCCagGGGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 211315 0.69 0.815586
Target:  5'- uCCGAGcgcauCGUGgcGGUCcgggCCCGGGCGc -3'
miRNA:   3'- cGGUUCau---GCACuuCCAG----GGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 195329 0.69 0.84001
Target:  5'- cGCCuacgacauGUGCGUGAcccggcgccGGGaaCCCCGGGUg -3'
miRNA:   3'- -CGGuu------CAUGCACU---------UCCa-GGGGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 192861 0.68 0.89696
Target:  5'- cCCGAGUGacaGU---GGUCCCCGGGg- -3'
miRNA:   3'- cGGUUCAUg--CAcuuCCAGGGGCCCgu -5'
9010 5' -56.6 NC_002512.2 + 191652 0.66 0.944707
Target:  5'- aGCCAGG-ACGgcGGAGacguccgcGUCCCgGGGCu -3'
miRNA:   3'- -CGGUUCaUGCa-CUUC--------CAGGGgCCCGu -5'
9010 5' -56.6 NC_002512.2 + 185842 0.67 0.913173
Target:  5'- cCCAguucuucugggagcGGUACGUcgaGGAGGgcgCCUCGGGCc -3'
miRNA:   3'- cGGU--------------UCAUGCA---CUUCCa--GGGGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 173764 1.1 0.00338
Target:  5'- cGCCAAGUACGUGAAGGUCCCCGGGCAc -3'
miRNA:   3'- -CGGUUCAUGCACUUCCAGGGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 169589 0.68 0.865763
Target:  5'- cGCCAGGUACGacGAcAGGUCCuuGuucuucaggucggccGGCAg -3'
miRNA:   3'- -CGGUUCAUGCa-CU-UCCAGGggC---------------CCGU- -5'
9010 5' -56.6 NC_002512.2 + 165564 0.66 0.935654
Target:  5'- uGCCAGGUcggcgACGUGguGG---CCGGGCAg -3'
miRNA:   3'- -CGGUUCA-----UGCACuuCCaggGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 158693 0.7 0.771869
Target:  5'- gGCCGGG-ACGgGGAGGUgCCCGaGGUg -3'
miRNA:   3'- -CGGUUCaUGCaCUUCCAgGGGC-CCGu -5'
9010 5' -56.6 NC_002512.2 + 157340 0.66 0.932765
Target:  5'- -aCGAGUcCGUGuuccgccuggccgccGAGGUCCgggccgCCGGGCAg -3'
miRNA:   3'- cgGUUCAuGCAC---------------UUCCAGG------GGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 153017 0.67 0.903151
Target:  5'- gGUCGGGUcgGCGgGAGcGGUCCCCGGuCGg -3'
miRNA:   3'- -CGGUUCA--UGCaCUU-CCAGGGGCCcGU- -5'
9010 5' -56.6 NC_002512.2 + 152967 0.67 0.903151
Target:  5'- gGUCGGGUcgGCGgGAGcGGUCCCCGGuCGg -3'
miRNA:   3'- -CGGUUCA--UGCaCUU-CCAGGGGCCcGU- -5'
9010 5' -56.6 NC_002512.2 + 152871 0.72 0.657045
Target:  5'- aGCCGGuGUGCGgGAGcGGUCCCCGGuCGg -3'
miRNA:   3'- -CGGUU-CAUGCaCUU-CCAGGGGCCcGU- -5'
9010 5' -56.6 NC_002512.2 + 152737 0.68 0.870078
Target:  5'- uUCGGGgGCGgucgGAAGGUCCCCcgacGGCGa -3'
miRNA:   3'- cGGUUCaUGCa---CUUCCAGGGGc---CCGU- -5'
9010 5' -56.6 NC_002512.2 + 136218 0.7 0.789762
Target:  5'- gGCCuGGUGCGcGggGGUCagcgugCUGGGCu -3'
miRNA:   3'- -CGGuUCAUGCaCuuCCAGg-----GGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 135209 0.67 0.903151
Target:  5'- cGCCAgcGGgcCG-GggGGccccccggCCCCGGGCc -3'
miRNA:   3'- -CGGU--UCauGCaCuuCCa-------GGGGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 131987 0.68 0.89696
Target:  5'- -aCGAGgucGCGUGGGccgCCCCGGGCGc -3'
miRNA:   3'- cgGUUCa--UGCACUUccaGGGGCCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.