miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9010 5' -56.6 NC_002512.2 + 185842 0.67 0.913173
Target:  5'- cCCAguucuucugggagcGGUACGUcgaGGAGGgcgCCUCGGGCc -3'
miRNA:   3'- cGGU--------------UCAUGCA---CUUCCa--GGGGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 109797 0.67 0.908536
Target:  5'- cGCCAGGgggaggGCGaacaggaucagucUGAGGGgagUCCCCugGGGCGg -3'
miRNA:   3'- -CGGUUCa-----UGC-------------ACUUCC---AGGGG--CCCGU- -5'
9010 5' -56.6 NC_002512.2 + 153017 0.67 0.903151
Target:  5'- gGUCGGGUcgGCGgGAGcGGUCCCCGGuCGg -3'
miRNA:   3'- -CGGUUCA--UGCaCUU-CCAGGGGCCcGU- -5'
9010 5' -56.6 NC_002512.2 + 152967 0.67 0.903151
Target:  5'- gGUCGGGUcgGCGgGAGcGGUCCCCGGuCGg -3'
miRNA:   3'- -CGGUUCA--UGCaCUU-CCAGGGGCCcGU- -5'
9010 5' -56.6 NC_002512.2 + 108470 0.67 0.903151
Target:  5'- cGCCGGGUucgcgcugaACGUGAcGGUCgUCaaGGGCGa -3'
miRNA:   3'- -CGGUUCA---------UGCACUuCCAGgGG--CCCGU- -5'
9010 5' -56.6 NC_002512.2 + 135209 0.67 0.903151
Target:  5'- cGCCAgcGGgcCG-GggGGccccccggCCCCGGGCc -3'
miRNA:   3'- -CGGU--UCauGCaCuuCCa-------GGGGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 109739 0.68 0.89696
Target:  5'- gGCCGGuUGCGc--GGGUCCUCGGGUc -3'
miRNA:   3'- -CGGUUcAUGCacuUCCAGGGGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 192861 0.68 0.89696
Target:  5'- cCCGAGUGacaGU---GGUCCCCGGGg- -3'
miRNA:   3'- cGGUUCAUg--CAcuuCCAGGGGCCCgu -5'
9010 5' -56.6 NC_002512.2 + 131987 0.68 0.89696
Target:  5'- -aCGAGgucGCGUGGGccgCCCCGGGCGc -3'
miRNA:   3'- cgGUUCa--UGCACUUccaGGGGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 111874 0.68 0.890554
Target:  5'- uGUCGguGGU-CGUGAGGG-CCUCGaGGCAa -3'
miRNA:   3'- -CGGU--UCAuGCACUUCCaGGGGC-CCGU- -5'
9010 5' -56.6 NC_002512.2 + 152737 0.68 0.870078
Target:  5'- uUCGGGgGCGgucgGAAGGUCCCCcgacGGCGa -3'
miRNA:   3'- cGGUUCaUGCa---CUUCCAGGGGc---CCGU- -5'
9010 5' -56.6 NC_002512.2 + 128690 0.68 0.870078
Target:  5'- gGCCGu---CGUGAucggcaagGGGUCCuUCGGGCAg -3'
miRNA:   3'- -CGGUucauGCACU--------UCCAGG-GGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 226712 0.68 0.870078
Target:  5'- cGUCGAGcgACG-GGAGG-CCgCGGGCGa -3'
miRNA:   3'- -CGGUUCa-UGCaCUUCCaGGgGCCCGU- -5'
9010 5' -56.6 NC_002512.2 + 7118 0.68 0.870078
Target:  5'- aGCUuGGUugGcGAgacAGGUCCCuCGGGUc -3'
miRNA:   3'- -CGGuUCAugCaCU---UCCAGGG-GCCCGu -5'
9010 5' -56.6 NC_002512.2 + 83057 0.68 0.869364
Target:  5'- gGCCAGGcgaccucgcGCGcGAAGGUCuccagguCCCGGGCc -3'
miRNA:   3'- -CGGUUCa--------UGCaCUUCCAG-------GGGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 169589 0.68 0.865763
Target:  5'- cGCCAGGUACGacGAcAGGUCCuuGuucuucaggucggccGGCAg -3'
miRNA:   3'- -CGGUUCAUGCa-CU-UCCAGGggC---------------CCGU- -5'
9010 5' -56.6 NC_002512.2 + 101573 0.69 0.855421
Target:  5'- gGUCGAGgucgaGCGU-AGGGUCCCCGcGGUc -3'
miRNA:   3'- -CGGUUCa----UGCAcUUCCAGGGGC-CCGu -5'
9010 5' -56.6 NC_002512.2 + 90691 0.69 0.853157
Target:  5'- gGCCAGGUccucgacggcgucgGCGUGAcagGGGUCCaCCauguGGCGg -3'
miRNA:   3'- -CGGUUCA--------------UGCACU---UCCAGG-GGc---CCGU- -5'
9010 5' -56.6 NC_002512.2 + 195329 0.69 0.84001
Target:  5'- cGCCuacgacauGUGCGUGAcccggcgccGGGaaCCCCGGGUg -3'
miRNA:   3'- -CGGuu------CAUGCACU---------UCCa-GGGGCCCGu -5'
9010 5' -56.6 NC_002512.2 + 45963 0.69 0.815586
Target:  5'- aGCCGAGc-CGcUGAAGGgUCCCGaGGCAg -3'
miRNA:   3'- -CGGUUCauGC-ACUUCCaGGGGC-CCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.