Results 41 - 46 of 46 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 9015 | 5' | -58 | NC_002512.2 | + | 7234 | 0.66 | 0.902695 |
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Target: 5'- cCUCGGCccggccgGCCgUCgcggcgGAGCGGCgUCCg -3' miRNA: 3'- -GAGCUG-------CGGgAGaua---CUCGCCG-AGGa -5' |
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| 9015 | 5' | -58 | NC_002512.2 | + | 43228 | 0.66 | 0.909244 |
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Target: 5'- -aCGACGUCCUCccgGAGCugGGC-CCa -3' miRNA: 3'- gaGCUGCGGGAGauaCUCG--CCGaGGa -5' |
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| 9015 | 5' | -58 | NC_002512.2 | + | 156270 | 0.66 | 0.909244 |
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Target: 5'- -gCGGCGCCUucgacuUCUccGAGUGGC-CCg -3' miRNA: 3'- gaGCUGCGGG------AGAuaCUCGCCGaGGa -5' |
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| 9015 | 5' | -58 | NC_002512.2 | + | 100614 | 0.66 | 0.914405 |
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Target: 5'- gCUCGACGCacgacagCUUCUG-GAGCGGCa--- -3' miRNA: 3'- -GAGCUGCG-------GGAGAUaCUCGCCGagga -5' |
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| 9015 | 5' | -58 | NC_002512.2 | + | 145155 | 0.66 | 0.914967 |
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Target: 5'- -aCGGCGCUgUCgcgcGAGCGGaUCCUg -3' miRNA: 3'- gaGCUGCGGgAGaua-CUCGCCgAGGA- -5' |
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| 9015 | 5' | -58 | NC_002512.2 | + | 99631 | 0.66 | 0.914967 |
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Target: 5'- gUCGuCGCCCUCg--GAG-GGC-CCg -3' miRNA: 3'- gAGCuGCGGGAGauaCUCgCCGaGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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