miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9015 5' -58 NC_002512.2 + 224991 0.68 0.832575
Target:  5'- -gCGGCGCCCUCUucccgucGCcGCUCCUc -3'
miRNA:   3'- gaGCUGCGGGAGAuacu---CGcCGAGGA- -5'
9015 5' -58 NC_002512.2 + 219415 0.68 0.832575
Target:  5'- -gCGACGCCCaCgcccgGGGCGGCggcggCCUc -3'
miRNA:   3'- gaGCUGCGGGaGaua--CUCGCCGa----GGA- -5'
9015 5' -58 NC_002512.2 + 211878 0.7 0.726363
Target:  5'- gUCGGCGCCCUg---GAGCGGgUCa- -3'
miRNA:   3'- gAGCUGCGGGAgauaCUCGCCgAGga -5'
9015 5' -58 NC_002512.2 + 207892 0.7 0.716828
Target:  5'- -cUGGCGCUCUCggc-GGUGGCUCCUc -3'
miRNA:   3'- gaGCUGCGGGAGauacUCGCCGAGGA- -5'
9015 5' -58 NC_002512.2 + 200307 0.79 0.27522
Target:  5'- gCUCGucCGCCCUCgggGAGCGGCUUCc -3'
miRNA:   3'- -GAGCu-GCGGGAGauaCUCGCCGAGGa -5'
9015 5' -58 NC_002512.2 + 199598 0.68 0.824477
Target:  5'- gUCGACGCgggggccuCCUCcAUGGcGcCGGCUCCg -3'
miRNA:   3'- gAGCUGCG--------GGAGaUACU-C-GCCGAGGa -5'
9015 5' -58 NC_002512.2 + 199287 0.67 0.870404
Target:  5'- aUCcGCGCCCUCcgGUuGGUGGcCUCCUc -3'
miRNA:   3'- gAGcUGCGGGAGa-UAcUCGCC-GAGGA- -5'
9015 5' -58 NC_002512.2 + 176513 0.68 0.832575
Target:  5'- cCUCGgucuccggaGCGUCCUCUAUGuGCggaGGCUCgCUc -3'
miRNA:   3'- -GAGC---------UGCGGGAGAUACuCG---CCGAG-GA- -5'
9015 5' -58 NC_002512.2 + 170868 1.07 0.003973
Target:  5'- cCUCGACGCCCUCUAUGAGCGGCUCCUc -3'
miRNA:   3'- -GAGCUGCGGGAGAUACUCGCCGAGGA- -5'
9015 5' -58 NC_002512.2 + 166197 0.7 0.716828
Target:  5'- -cCGugGCCUUCU-UGGGCGGCgaggagggCCg -3'
miRNA:   3'- gaGCugCGGGAGAuACUCGCCGa-------GGa -5'
9015 5' -58 NC_002512.2 + 164451 0.69 0.754482
Target:  5'- gCUCGGCGCCCUCggcggGGGCGacgaccGC-CCg -3'
miRNA:   3'- -GAGCUGCGGGAGaua--CUCGC------CGaGGa -5'
9015 5' -58 NC_002512.2 + 158013 0.67 0.863213
Target:  5'- uUCGACGCCCUg---GucCGGUUCCUc -3'
miRNA:   3'- gAGCUGCGGGAgauaCucGCCGAGGA- -5'
9015 5' -58 NC_002512.2 + 156270 0.66 0.909244
Target:  5'- -gCGGCGCCUucgacuUCUccGAGUGGC-CCg -3'
miRNA:   3'- gaGCUGCGGG------AGAuaCUCGCCGaGGa -5'
9015 5' -58 NC_002512.2 + 145155 0.66 0.914967
Target:  5'- -aCGGCGCUgUCgcgcGAGCGGaUCCUg -3'
miRNA:   3'- gaGCUGCGGgAGaua-CUCGCCgAGGA- -5'
9015 5' -58 NC_002512.2 + 140843 0.68 0.816217
Target:  5'- uUCGuCGCCCUCUgaaaGUGcGCGGC-CUg -3'
miRNA:   3'- gAGCuGCGGGAGA----UACuCGCCGaGGa -5'
9015 5' -58 NC_002512.2 + 140070 0.67 0.869694
Target:  5'- uCUCGACGUCCUCUcgGcGCucaucGGCgaccccgUCCUg -3'
miRNA:   3'- -GAGCUGCGGGAGAuaCuCG-----CCG-------AGGA- -5'
9015 5' -58 NC_002512.2 + 137197 0.68 0.799239
Target:  5'- gUCGGucCGCCCg--GUGGGCGGCgcgCCc -3'
miRNA:   3'- gAGCU--GCGGGagaUACUCGCCGa--GGa -5'
9015 5' -58 NC_002512.2 + 132218 0.7 0.697565
Target:  5'- --gGACGCCC---AUGAGCaGCUCCUg -3'
miRNA:   3'- gagCUGCGGGagaUACUCGcCGAGGA- -5'
9015 5' -58 NC_002512.2 + 129988 0.66 0.884187
Target:  5'- -cCGGCGCCCUCgacGGGCcGCgCCUc -3'
miRNA:   3'- gaGCUGCGGGAGauaCUCGcCGaGGA- -5'
9015 5' -58 NC_002512.2 + 127491 0.66 0.884187
Target:  5'- -cCGcCGCCCUCgggcggGAGCauccccucguccGGCUCCa -3'
miRNA:   3'- gaGCuGCGGGAGaua---CUCG------------CCGAGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.