miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9016 3' -56.4 NC_002512.2 + 170562 1.08 0.0051
Target:  5'- cGUCCAGGUCGCAGUUCUCCUCCGUCGc -3'
miRNA:   3'- -CAGGUCCAGCGUCAAGAGGAGGCAGC- -5'
9016 3' -56.4 NC_002512.2 + 43704 0.77 0.431248
Target:  5'- cUCCAGGagGCAGUUCUCCagacagaCGUCGa -3'
miRNA:   3'- cAGGUCCagCGUCAAGAGGag-----GCAGC- -5'
9016 3' -56.4 NC_002512.2 + 178240 0.75 0.56051
Target:  5'- cUCCGGGgacggCGCGG-UCUCCgggUCCGUCGc -3'
miRNA:   3'- cAGGUCCa----GCGUCaAGAGG---AGGCAGC- -5'
9016 3' -56.4 NC_002512.2 + 83083 0.73 0.639178
Target:  5'- cUCCAGGUCcCGGgcCUCCUCCGggucCGg -3'
miRNA:   3'- cAGGUCCAGcGUCaaGAGGAGGCa---GC- -5'
9016 3' -56.4 NC_002512.2 + 122824 0.71 0.727019
Target:  5'- cGUCCAGcgcGUCGacCGGgaCUUCUCCGUCGg -3'
miRNA:   3'- -CAGGUC---CAGC--GUCaaGAGGAGGCAGC- -5'
9016 3' -56.4 NC_002512.2 + 2390 0.71 0.745908
Target:  5'- -cCCGGGUCGCGGcgUCUCCUaCCuccUCGc -3'
miRNA:   3'- caGGUCCAGCGUCa-AGAGGA-GGc--AGC- -5'
9016 3' -56.4 NC_002512.2 + 191186 0.71 0.755217
Target:  5'- aUCUGGG-CGaccgUCUCCUCCGUCGg -3'
miRNA:   3'- cAGGUCCaGCgucaAGAGGAGGCAGC- -5'
9016 3' -56.4 NC_002512.2 + 174640 0.71 0.773523
Target:  5'- aGUCCGGGUCGCcggcacGUUCUCCaggugCCG-Ca -3'
miRNA:   3'- -CAGGUCCAGCGu-----CAAGAGGa----GGCaGc -5'
9016 3' -56.4 NC_002512.2 + 38226 0.7 0.808657
Target:  5'- -cCCGGGaCGCGGacgUCUCCgCCGUCc -3'
miRNA:   3'- caGGUCCaGCGUCa--AGAGGaGGCAGc -5'
9016 3' -56.4 NC_002512.2 + 143762 0.7 0.825358
Target:  5'- uUCCAGGUcCGCGac-CUCCUCCG-CGc -3'
miRNA:   3'- cAGGUCCA-GCGUcaaGAGGAGGCaGC- -5'
9016 3' -56.4 NC_002512.2 + 194932 0.69 0.833466
Target:  5'- -aCCcGGUCGCGGccgCUCCgcuccCCGUCGc -3'
miRNA:   3'- caGGuCCAGCGUCaa-GAGGa----GGCAGC- -5'
9016 3' -56.4 NC_002512.2 + 110797 0.69 0.849163
Target:  5'- -aCCAGGUcCGCcgcgauGUUCUCCUCCccgaGUCc -3'
miRNA:   3'- caGGUCCA-GCGu-----CAAGAGGAGG----CAGc -5'
9016 3' -56.4 NC_002512.2 + 177550 0.68 0.871317
Target:  5'- uGUCCAGGaUCGUcuGGUUCggggCCGUCGc -3'
miRNA:   3'- -CAGGUCC-AGCG--UCAAGaggaGGCAGC- -5'
9016 3' -56.4 NC_002512.2 + 79619 0.68 0.878308
Target:  5'- -gCCGGGUCGCGGUaCUCgg-CGUCGu -3'
miRNA:   3'- caGGUCCAGCGUCAaGAGgagGCAGC- -5'
9016 3' -56.4 NC_002512.2 + 2610 0.68 0.904186
Target:  5'- cUCCuGGU-GCuGUUCUCCgCCGUCc -3'
miRNA:   3'- cAGGuCCAgCGuCAAGAGGaGGCAGc -5'
9016 3' -56.4 NC_002512.2 + 110069 0.68 0.904186
Target:  5'- cGUCCAGGUCGauCAGgagCUCCagCGUg- -3'
miRNA:   3'- -CAGGUCCAGC--GUCaa-GAGGagGCAgc -5'
9016 3' -56.4 NC_002512.2 + 198569 0.68 0.904186
Target:  5'- uGUCCAGGUCGUAca--UCCUCgaGUUGa -3'
miRNA:   3'- -CAGGUCCAGCGUcaagAGGAGg-CAGC- -5'
9016 3' -56.4 NC_002512.2 + 213524 0.68 0.904186
Target:  5'- cGUCCGGGUCGgGGUgC-CCUCggagCGUCu -3'
miRNA:   3'- -CAGGUCCAGCgUCAaGaGGAG----GCAGc -5'
9016 3' -56.4 NC_002512.2 + 93849 0.67 0.910116
Target:  5'- gGUCgaCGGGUCGCGG-UCUCCcuUCCGagGu -3'
miRNA:   3'- -CAG--GUCCAGCGUCaAGAGG--AGGCagC- -5'
9016 3' -56.4 NC_002512.2 + 120885 0.67 0.910116
Target:  5'- cUCgAGGUC-Cc--UCUCCUCCGUCGc -3'
miRNA:   3'- cAGgUCCAGcGucaAGAGGAGGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.