miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9016 3' -56.4 NC_002512.2 + 1364 0.67 0.92658
Target:  5'- cGUCCucGUCGCcuccGUcUCUCCUCCG-CGu -3'
miRNA:   3'- -CAGGucCAGCGu---CA-AGAGGAGGCaGC- -5'
9016 3' -56.4 NC_002512.2 + 2390 0.71 0.745908
Target:  5'- -cCCGGGUCGCGGcgUCUCCUaCCuccUCGc -3'
miRNA:   3'- caGGUCCAGCGUCa-AGAGGA-GGc--AGC- -5'
9016 3' -56.4 NC_002512.2 + 2610 0.68 0.904186
Target:  5'- cUCCuGGU-GCuGUUCUCCgCCGUCc -3'
miRNA:   3'- cAGGuCCAgCGuCAAGAGGaGGCAGc -5'
9016 3' -56.4 NC_002512.2 + 20573 0.66 0.944125
Target:  5'- cGUCCAGGUcgacccugacgcCGCcGUUCUCCUUgacgcagcgcuccaCGUCc -3'
miRNA:   3'- -CAGGUCCA------------GCGuCAAGAGGAG--------------GCAGc -5'
9016 3' -56.4 NC_002512.2 + 25008 0.66 0.958319
Target:  5'- cGUCCGagagcucgccgucGGUCGCGGacCUCCacgaggaccgaccgCCGUCGu -3'
miRNA:   3'- -CAGGU-------------CCAGCGUCaaGAGGa-------------GGCAGC- -5'
9016 3' -56.4 NC_002512.2 + 38226 0.7 0.808657
Target:  5'- -cCCGGGaCGCGGacgUCUCCgCCGUCc -3'
miRNA:   3'- caGGUCCaGCGUCa--AGAGGaGGCAGc -5'
9016 3' -56.4 NC_002512.2 + 43704 0.77 0.431248
Target:  5'- cUCCAGGagGCAGUUCUCCagacagaCGUCGa -3'
miRNA:   3'- cAGGUCCagCGUCAAGAGGag-----GCAGC- -5'
9016 3' -56.4 NC_002512.2 + 44895 0.66 0.941038
Target:  5'- -aCCGGGcCGCAGcgCUCa--CGUCGa -3'
miRNA:   3'- caGGUCCaGCGUCaaGAGgagGCAGC- -5'
9016 3' -56.4 NC_002512.2 + 79619 0.68 0.878308
Target:  5'- -gCCGGGUCGCGGUaCUCgg-CGUCGu -3'
miRNA:   3'- caGGUCCAGCGUCAaGAGgagGCAGC- -5'
9016 3' -56.4 NC_002512.2 + 83083 0.73 0.639178
Target:  5'- cUCCAGGUCcCGGgcCUCCUCCGggucCGg -3'
miRNA:   3'- cAGGUCCAGcGUCaaGAGGAGGCa---GC- -5'
9016 3' -56.4 NC_002512.2 + 93849 0.67 0.910116
Target:  5'- gGUCgaCGGGUCGCGG-UCUCCcuUCCGagGu -3'
miRNA:   3'- -CAG--GUCCAGCGUCaAGAGG--AGGCagC- -5'
9016 3' -56.4 NC_002512.2 + 94968 0.66 0.945415
Target:  5'- cGUUCAGGUggcUGCGGaUCgCC-CCGUCGa -3'
miRNA:   3'- -CAGGUCCA---GCGUCaAGaGGaGGCAGC- -5'
9016 3' -56.4 NC_002512.2 + 107321 0.67 0.931622
Target:  5'- uGUUgGGGg-GCAgGUUCacgUCCUCCGUCGc -3'
miRNA:   3'- -CAGgUCCagCGU-CAAG---AGGAGGCAGC- -5'
9016 3' -56.4 NC_002512.2 + 108492 0.67 0.931622
Target:  5'- -gCCAGG-CGCGGcUCcgUCCggCCGUCGc -3'
miRNA:   3'- caGGUCCaGCGUCaAG--AGGa-GGCAGC- -5'
9016 3' -56.4 NC_002512.2 + 110069 0.68 0.904186
Target:  5'- cGUCCAGGUCGauCAGgagCUCCagCGUg- -3'
miRNA:   3'- -CAGGUCCAGC--GUCaa-GAGGagGCAgc -5'
9016 3' -56.4 NC_002512.2 + 110797 0.69 0.849163
Target:  5'- -aCCAGGUcCGCcgcgauGUUCUCCUCCccgaGUCc -3'
miRNA:   3'- caGGUCCA-GCGu-----CAAGAGGAGG----CAGc -5'
9016 3' -56.4 NC_002512.2 + 111745 0.66 0.956879
Target:  5'- -gCCAuGUCGCGGUUCcgcccccgcccccUCC-CCGUCa -3'
miRNA:   3'- caGGUcCAGCGUCAAG-------------AGGaGGCAGc -5'
9016 3' -56.4 NC_002512.2 + 111837 0.67 0.92658
Target:  5'- gGUCCGguGGUCGUAGagCgCCgCCGUCGc -3'
miRNA:   3'- -CAGGU--CCAGCGUCaaGaGGaGGCAGC- -5'
9016 3' -56.4 NC_002512.2 + 112275 0.67 0.92658
Target:  5'- cGUCacgauGUCcCGGUUCUCCUUCGUCa -3'
miRNA:   3'- -CAGguc--CAGcGUCAAGAGGAGGCAGc -5'
9016 3' -56.4 NC_002512.2 + 120885 0.67 0.910116
Target:  5'- cUCgAGGUC-Cc--UCUCCUCCGUCGc -3'
miRNA:   3'- cAGgUCCAGcGucaAGAGGAGGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.