Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9016 | 3' | -56.4 | NC_002512.2 | + | 83083 | 0.73 | 0.639178 |
Target: 5'- cUCCAGGUCcCGGgcCUCCUCCGggucCGg -3' miRNA: 3'- cAGGUCCAGcGUCaaGAGGAGGCa---GC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 94968 | 0.66 | 0.945415 |
Target: 5'- cGUUCAGGUggcUGCGGaUCgCC-CCGUCGa -3' miRNA: 3'- -CAGGUCCA---GCGUCaAGaGGaGGCAGC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 20573 | 0.66 | 0.944125 |
Target: 5'- cGUCCAGGUcgacccugacgcCGCcGUUCUCCUUgacgcagcgcuccaCGUCc -3' miRNA: 3'- -CAGGUCCA------------GCGuCAAGAGGAG--------------GCAGc -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 125742 | 0.66 | 0.941038 |
Target: 5'- uGUCCGGGUCGCG--UCcCCcagcCCGUCc -3' miRNA: 3'- -CAGGUCCAGCGUcaAGaGGa---GGCAGc -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 44895 | 0.66 | 0.941038 |
Target: 5'- -aCCGGGcCGCAGcgCUCa--CGUCGa -3' miRNA: 3'- caGGUCCaGCGUCaaGAGgagGCAGC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 108492 | 0.67 | 0.931622 |
Target: 5'- -gCCAGG-CGCGGcUCcgUCCggCCGUCGc -3' miRNA: 3'- caGGUCCaGCGUCaAG--AGGa-GGCAGC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 107321 | 0.67 | 0.931622 |
Target: 5'- uGUUgGGGg-GCAgGUUCacgUCCUCCGUCGc -3' miRNA: 3'- -CAGgUCCagCGU-CAAG---AGGAGGCAGC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 127016 | 0.67 | 0.929632 |
Target: 5'- gGUCCGGG-CGCGuUUCUCCgacaagagcgugcCCGUCu -3' miRNA: 3'- -CAGGUCCaGCGUcAAGAGGa------------GGCAGc -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 111837 | 0.67 | 0.92658 |
Target: 5'- gGUCCGguGGUCGUAGagCgCCgCCGUCGc -3' miRNA: 3'- -CAGGU--CCAGCGUCaaGaGGaGGCAGC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 1364 | 0.67 | 0.92658 |
Target: 5'- cGUCCucGUCGCcuccGUcUCUCCUCCG-CGu -3' miRNA: 3'- -CAGGucCAGCGu---CA-AGAGGAGGCaGC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 112275 | 0.67 | 0.92658 |
Target: 5'- cGUCacgauGUCcCGGUUCUCCUUCGUCa -3' miRNA: 3'- -CAGguc--CAGcGUCAAGAGGAGGCAGc -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 120885 | 0.67 | 0.910116 |
Target: 5'- cUCgAGGUC-Cc--UCUCCUCCGUCGc -3' miRNA: 3'- cAGgUCCAGcGucaAGAGGAGGCAGC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 93849 | 0.67 | 0.910116 |
Target: 5'- gGUCgaCGGGUCGCGG-UCUCCcuUCCGagGu -3' miRNA: 3'- -CAG--GUCCAGCGUCaAGAGG--AGGCagC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 2610 | 0.68 | 0.904186 |
Target: 5'- cUCCuGGU-GCuGUUCUCCgCCGUCc -3' miRNA: 3'- cAGGuCCAgCGuCAAGAGGaGGCAGc -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 110069 | 0.68 | 0.904186 |
Target: 5'- cGUCCAGGUCGauCAGgagCUCCagCGUg- -3' miRNA: 3'- -CAGGUCCAGC--GUCaa-GAGGagGCAgc -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 79619 | 0.68 | 0.878308 |
Target: 5'- -gCCGGGUCGCGGUaCUCgg-CGUCGu -3' miRNA: 3'- caGGUCCAGCGUCAaGAGgagGCAGC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 38226 | 0.7 | 0.808657 |
Target: 5'- -cCCGGGaCGCGGacgUCUCCgCCGUCc -3' miRNA: 3'- caGGUCCaGCGUCa--AGAGGaGGCAGc -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 2390 | 0.71 | 0.745908 |
Target: 5'- -cCCGGGUCGCGGcgUCUCCUaCCuccUCGc -3' miRNA: 3'- caGGUCCAGCGUCa-AGAGGA-GGc--AGC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 122824 | 0.71 | 0.727019 |
Target: 5'- cGUCCAGcgcGUCGacCGGgaCUUCUCCGUCGg -3' miRNA: 3'- -CAGGUC---CAGC--GUCaaGAGGAGGCAGC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 43704 | 0.77 | 0.431248 |
Target: 5'- cUCCAGGagGCAGUUCUCCagacagaCGUCGa -3' miRNA: 3'- cAGGUCCagCGUCAAGAGGag-----GCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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