miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9016 5' -56.3 NC_002512.2 + 207945 0.79 0.360094
Target:  5'- gCUCGGGUCCGUCcucucGGCACGuCGUCGCc -3'
miRNA:   3'- -GGGCUCAGGCAGc----UCGUGCuGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 204686 0.71 0.813637
Target:  5'- uCCCGc-UCCGUCGcGGCggacGCGACGUCGg -3'
miRNA:   3'- -GGGCucAGGCAGC-UCG----UGCUGCAGUg -5'
9016 5' -56.3 NC_002512.2 + 200194 0.67 0.946673
Target:  5'- cUCCGAGaCgGaCGAGCGCGACGa--- -3'
miRNA:   3'- -GGGCUCaGgCaGCUCGUGCUGCagug -5'
9016 5' -56.3 NC_002512.2 + 194235 0.72 0.761416
Target:  5'- gCCGGuGUCguCGUCGAGCAUGAUGauauUCGCg -3'
miRNA:   3'- gGGCU-CAG--GCAGCUCGUGCUGC----AGUG- -5'
9016 5' -56.3 NC_002512.2 + 193733 0.67 0.942423
Target:  5'- gCUCGAGUUCGUgggCGAaCGCGGCcUCGCg -3'
miRNA:   3'- -GGGCUCAGGCA---GCUcGUGCUGcAGUG- -5'
9016 5' -56.3 NC_002512.2 + 193115 0.68 0.91794
Target:  5'- gCCgGAGagcUgCGUCcGGCcCGACGUCACg -3'
miRNA:   3'- -GGgCUC---AgGCAGcUCGuGCUGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 191894 0.67 0.950316
Target:  5'- aCCUGGGugggauuUCCGcgccUCGAGCgugACGAUGUCAg -3'
miRNA:   3'- -GGGCUC-------AGGC----AGCUCG---UGCUGCAGUg -5'
9016 5' -56.3 NC_002512.2 + 191889 0.66 0.958161
Target:  5'- cCCCGAGcggCCGUCcauucacauggGAGCGCGcuaugauCGUgACg -3'
miRNA:   3'- -GGGCUCa--GGCAG-----------CUCGUGCu------GCAgUG- -5'
9016 5' -56.3 NC_002512.2 + 190407 0.66 0.953412
Target:  5'- gCCGAGuUCUGUCgccgggggcugcggGAGCGgGcCGUCACc -3'
miRNA:   3'- gGGCUC-AGGCAG--------------CUCGUgCuGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 189590 0.71 0.805264
Target:  5'- gCCGGGUCC-UCGGG-ACGACGUUcguGCg -3'
miRNA:   3'- gGGCUCAGGcAGCUCgUGCUGCAG---UG- -5'
9016 5' -56.3 NC_002512.2 + 189542 0.71 0.779322
Target:  5'- cCCCGAGgggaaucaaUUCGacaucgCGAGCgacgGCGACGUCGCa -3'
miRNA:   3'- -GGGCUC---------AGGCa-----GCUCG----UGCUGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 189219 0.66 0.958161
Target:  5'- gCUCGAcgucggauccGUCCGUCGccgucGCG-GACGUCACc -3'
miRNA:   3'- -GGGCU----------CAGGCAGCu----CGUgCUGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 188501 0.7 0.845563
Target:  5'- aCCCGcaacgagguGUCCuaCGAGCGCGGCGUCc- -3'
miRNA:   3'- -GGGCu--------CAGGcaGCUCGUGCUGCAGug -5'
9016 5' -56.3 NC_002512.2 + 187247 0.67 0.950711
Target:  5'- aCUuGGUCUG-CGAGUcccaGCGugGUCGCa -3'
miRNA:   3'- gGGcUCAGGCaGCUCG----UGCugCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 184649 0.67 0.93328
Target:  5'- -gCGAGUCCG-CGGGCGCcGCGcCGa -3'
miRNA:   3'- ggGCUCAGGCaGCUCGUGcUGCaGUg -5'
9016 5' -56.3 NC_002512.2 + 182088 0.66 0.954539
Target:  5'- uCCgGGGUCUGggCGAaCAgGAUGUCGCc -3'
miRNA:   3'- -GGgCUCAGGCa-GCUcGUgCUGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 180443 0.66 0.958161
Target:  5'- cCCCGGGcggcgcCCGUCauuucucgacGGCuCGGCGUCGCg -3'
miRNA:   3'- -GGGCUCa-----GGCAGc---------UCGuGCUGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 179794 0.69 0.894473
Target:  5'- aCCG-GUCCGUCGuGUGCGG-GUCGa -3'
miRNA:   3'- gGGCuCAGGCAGCuCGUGCUgCAGUg -5'
9016 5' -56.3 NC_002512.2 + 179188 0.74 0.608482
Target:  5'- gCCGGGUCC-UCGGGC-CGguccaGCGUCACg -3'
miRNA:   3'- gGGCUCAGGcAGCUCGuGC-----UGCAGUG- -5'
9016 5' -56.3 NC_002512.2 + 178258 0.67 0.950711
Target:  5'- cUCCGGGUCCGUCGccauGUcuuCGAUGUUc- -3'
miRNA:   3'- -GGGCUCAGGCAGCu---CGu--GCUGCAGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.