miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9025 3' -59.3 NC_002512.2 + 177432 0.66 0.879913
Target:  5'- gGGGGGUCUuuauUGUGgaGAUAgGUcaccucugaucaaCCCCGa -3'
miRNA:   3'- aCCCCCGGA----ACACg-CUAUgCA-------------GGGGC- -5'
9025 3' -59.3 NC_002512.2 + 41193 0.66 0.873782
Target:  5'- cGGaGGaGCCgcc-GUGAU-CGUCCCCGa -3'
miRNA:   3'- aCC-CC-CGGaacaCGCUAuGCAGGGGC- -5'
9025 3' -59.3 NC_002512.2 + 80254 0.66 0.866785
Target:  5'- gGGccGGGCUccGUGCGGU-CcUCCCCGg -3'
miRNA:   3'- aCC--CCCGGaaCACGCUAuGcAGGGGC- -5'
9025 3' -59.3 NC_002512.2 + 42615 0.66 0.866785
Target:  5'- cGGGGGCaCUUcgagGCGA--CGUCCgCCa -3'
miRNA:   3'- aCCCCCG-GAAca--CGCUauGCAGG-GGc -5'
9025 3' -59.3 NC_002512.2 + 210849 0.66 0.866074
Target:  5'- cUGGGGGCUgcuccGCGAgaucgagUGCGUgCCCu -3'
miRNA:   3'- -ACCCCCGGaaca-CGCU-------AUGCAgGGGc -5'
9025 3' -59.3 NC_002512.2 + 38105 0.66 0.859597
Target:  5'- gUGGGaaucucuGCCUgucacggGCGAUcCGUCCCCGu -3'
miRNA:   3'- -ACCCc------CGGAaca----CGCUAuGCAGGGGC- -5'
9025 3' -59.3 NC_002512.2 + 57221 0.66 0.859597
Target:  5'- cGaGGGCCgagacGCGG-GCGUCCCCGc -3'
miRNA:   3'- aCcCCCGGaaca-CGCUaUGCAGGGGC- -5'
9025 3' -59.3 NC_002512.2 + 76114 0.66 0.852225
Target:  5'- gGGGGcGCCggggugGUGuCGAUgACGUCgUCCGa -3'
miRNA:   3'- aCCCC-CGGaa----CAC-GCUA-UGCAG-GGGC- -5'
9025 3' -59.3 NC_002512.2 + 101705 0.66 0.852225
Target:  5'- cGGcGGCCcgcucgGCGAccuCGUCCCCGg -3'
miRNA:   3'- aCCcCCGGaaca--CGCUau-GCAGGGGC- -5'
9025 3' -59.3 NC_002512.2 + 2494 0.66 0.844672
Target:  5'- cGGGcGGCCUUG-GgGA-ACGgaucucCCCCGa -3'
miRNA:   3'- aCCC-CCGGAACaCgCUaUGCa-----GGGGC- -5'
9025 3' -59.3 NC_002512.2 + 128580 0.67 0.836946
Target:  5'- cGGGGGCCgacccUGCGAgaggccgggACGUCCg-- -3'
miRNA:   3'- aCCCCCGGaac--ACGCUa--------UGCAGGggc -5'
9025 3' -59.3 NC_002512.2 + 29755 0.67 0.832229
Target:  5'- aGGGGGCCcgGcgaucgacgcgacgGCGAUGCugaaGUaCCCCGg -3'
miRNA:   3'- aCCCCCGGaaCa-------------CGCUAUG----CA-GGGGC- -5'
9025 3' -59.3 NC_002512.2 + 126919 0.67 0.829052
Target:  5'- gGGGaGGCCgggcUG-GCGAUACccgcccgcgCCCCGg -3'
miRNA:   3'- aCCC-CCGGa---ACaCGCUAUGca-------GGGGC- -5'
9025 3' -59.3 NC_002512.2 + 222421 0.67 0.812785
Target:  5'- cGGGGGCCggcagccGCGccGCGgcuucCCCCGg -3'
miRNA:   3'- aCCCCCGGaaca---CGCuaUGCa----GGGGC- -5'
9025 3' -59.3 NC_002512.2 + 204735 0.67 0.812785
Target:  5'- gGGGGGCCggacccggGUGCucaGCGaUCCCGg -3'
miRNA:   3'- aCCCCCGGaa------CACGcuaUGCaGGGGC- -5'
9025 3' -59.3 NC_002512.2 + 198698 0.67 0.804427
Target:  5'- gGGGGGuUCUUcggacGUcgaggucaccagGCGGUGCGUCuCCCGg -3'
miRNA:   3'- aCCCCC-GGAA-----CA------------CGCUAUGCAG-GGGC- -5'
9025 3' -59.3 NC_002512.2 + 95710 0.67 0.804427
Target:  5'- gGGGGGCCgggagGgGAagACGgcUCCCCGu -3'
miRNA:   3'- aCCCCCGGaaca-CgCUa-UGC--AGGGGC- -5'
9025 3' -59.3 NC_002512.2 + 108441 0.67 0.795928
Target:  5'- cGGGGGCCgg--GgGGUcCcUCCCCGg -3'
miRNA:   3'- aCCCCCGGaacaCgCUAuGcAGGGGC- -5'
9025 3' -59.3 NC_002512.2 + 152694 0.68 0.787296
Target:  5'- aGGGGGCCUccu-CGAU-CGUCCgCGa -3'
miRNA:   3'- aCCCCCGGAacacGCUAuGCAGGgGC- -5'
9025 3' -59.3 NC_002512.2 + 114805 0.68 0.778538
Target:  5'- cGGGuGGCCagGcgccGCGcgACGUUCCCGu -3'
miRNA:   3'- aCCC-CCGGaaCa---CGCuaUGCAGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.