miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9025 3' -59.3 NC_002512.2 + 82003 0.68 0.778538
Target:  5'- cGGGGGCggucgcgGCGAgcCGUCgCCCGg -3'
miRNA:   3'- aCCCCCGgaaca--CGCUauGCAG-GGGC- -5'
9025 3' -59.3 NC_002512.2 + 165655 0.68 0.778538
Target:  5'- cGGGGGCCUUcc-CGAggccgAgGUCCUCGa -3'
miRNA:   3'- aCCCCCGGAAcacGCUa----UgCAGGGGC- -5'
9025 3' -59.3 NC_002512.2 + 39619 0.68 0.760675
Target:  5'- cGGGGcGCUUUGcgGCGAgaugUACGUUUCCu -3'
miRNA:   3'- aCCCC-CGGAACa-CGCU----AUGCAGGGGc -5'
9025 3' -59.3 NC_002512.2 + 152681 0.68 0.742401
Target:  5'- -uGGGGCCggcgGcCGGUcucgucGCGUCCCCGg -3'
miRNA:   3'- acCCCCGGaacaC-GCUA------UGCAGGGGC- -5'
9025 3' -59.3 NC_002512.2 + 193826 0.69 0.72378
Target:  5'- -cGGGGUCg---GCGAUaaaagucgggGCGUCCCCGc -3'
miRNA:   3'- acCCCCGGaacaCGCUA----------UGCAGGGGC- -5'
9025 3' -59.3 NC_002512.2 + 13575 0.69 0.714359
Target:  5'- -cGGGGCCgcagaUGcagGUGAcccACGUCCCCGg -3'
miRNA:   3'- acCCCCGGa----ACa--CGCUa--UGCAGGGGC- -5'
9025 3' -59.3 NC_002512.2 + 71016 0.69 0.702971
Target:  5'- gGGGGGCCgccgccggccgGUcGaCGAcgACGUCCCCc -3'
miRNA:   3'- aCCCCCGGaa---------CA-C-GCUa-UGCAGGGGc -5'
9025 3' -59.3 NC_002512.2 + 95682 0.69 0.694378
Target:  5'- aGGGGGCCUUcagGuCGAUcucccgcACGUCgCCGa -3'
miRNA:   3'- aCCCCCGGAAca-C-GCUA-------UGCAGgGGC- -5'
9025 3' -59.3 NC_002512.2 + 13457 0.69 0.685748
Target:  5'- aGGGcGGCg----GCGAgccugGCGUCCCCGg -3'
miRNA:   3'- aCCC-CCGgaacaCGCUa----UGCAGGGGC- -5'
9025 3' -59.3 NC_002512.2 + 45803 0.7 0.656775
Target:  5'- cGGGGGCCgUGcUGCGGUuccuuGCGagacaUCUCCGa -3'
miRNA:   3'- aCCCCCGGaAC-ACGCUA-----UGC-----AGGGGC- -5'
9025 3' -59.3 NC_002512.2 + 136085 0.71 0.617929
Target:  5'- gGGGGGCCggcUGCGGacgccCGUCaCCCGa -3'
miRNA:   3'- aCCCCCGGaacACGCUau---GCAG-GGGC- -5'
9025 3' -59.3 NC_002512.2 + 116896 0.72 0.52045
Target:  5'- gGcGGGGCCggG-GCGGgcuccucggacgGCGUCCCCGg -3'
miRNA:   3'- aC-CCCCGGaaCaCGCUa-----------UGCAGGGGC- -5'
9025 3' -59.3 NC_002512.2 + 227711 0.73 0.503804
Target:  5'- cGGGGGC-----GCGGUACgGUCCCCGa -3'
miRNA:   3'- aCCCCCGgaacaCGCUAUG-CAGGGGC- -5'
9025 3' -59.3 NC_002512.2 + 159922 1.09 0.002392
Target:  5'- cUGGGGGCCUUGUGCGAUACGUCCCCGg -3'
miRNA:   3'- -ACCCCCGGAACACGCUAUGCAGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.